Results 41 - 60 of 102 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 147823 | 0.74 | 0.798191 |
Target: 5'- gCgGggGGCCugUGGggagAGGCCGGGGGg -3' miRNA: 3'- aGgCuuUCGGugGUUa---UCUGGUCUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 75434 | 0.74 | 0.788836 |
Target: 5'- gCCG--GGCCGCCAAccaACCGGAGGg -3' miRNA: 3'- aGGCuuUCGGUGGUUaucUGGUCUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 147278 | 0.76 | 0.667708 |
Target: 5'- -gCGGAGGCCGCCGA-GGACguCAGGGGg -3' miRNA: 3'- agGCUUUCGGUGGUUaUCUG--GUCUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 9101 | 0.77 | 0.64663 |
Target: 5'- cCCG-GAGCCACCGAgcGGCCAGccAGGc -3' miRNA: 3'- aGGCuUUCGGUGGUUauCUGGUC--UCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 49573 | 0.78 | 0.59387 |
Target: 5'- cCCGGAAGCCGUC---GGGCCGGAGGa -3' miRNA: 3'- aGGCUUUCGGUGGuuaUCUGGUCUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 88360 | 0.71 | 0.914761 |
Target: 5'- cCCGAAGGCCAUCG--GGGCCGccGGc -3' miRNA: 3'- aGGCUUUCGGUGGUuaUCUGGUcuCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 129694 | 0.71 | 0.914761 |
Target: 5'- cUCCGGAcGCCucuCCGGaGGcCCGGGGGg -3' miRNA: 3'- -AGGCUUuCGGu--GGUUaUCuGGUCUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 22462 | 0.69 | 0.965856 |
Target: 5'- gCCGuggccauGAGCCGCCGAUAcGACCgcgcgcAGaAGGg -3' miRNA: 3'- aGGCu------UUCGGUGGUUAU-CUGG------UC-UCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 10702 | 0.69 | 0.965856 |
Target: 5'- gCCGggGGggcguacgccaUCGCCAGcgGGACCGGAGc -3' miRNA: 3'- aGGCuuUC-----------GGUGGUUa-UCUGGUCUCc -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 98020 | 0.69 | 0.96243 |
Target: 5'- gCCuc-GGCCACC-GUGGGCCGGcGGg -3' miRNA: 3'- aGGcuuUCGGUGGuUAUCUGGUCuCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 134214 | 0.69 | 0.954876 |
Target: 5'- cCCGGcgggguuauAGGCCACgCAGUcGGAgCGGGGGg -3' miRNA: 3'- aGGCU---------UUCGGUG-GUUA-UCUgGUCUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 141124 | 0.7 | 0.950739 |
Target: 5'- cCCGAca-UCACCGAcccguaugAGACCAGAGGu -3' miRNA: 3'- aGGCUuucGGUGGUUa-------UCUGGUCUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 91348 | 0.7 | 0.950739 |
Target: 5'- cCCGGGacccacguggcGGCCAacCCAcagGUGGACCGcGAGGg -3' miRNA: 3'- aGGCUU-----------UCGGU--GGU---UAUCUGGU-CUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 60603 | 0.7 | 0.950739 |
Target: 5'- aCCGggGGCCACCcc--GGCCccAGGu -3' miRNA: 3'- aGGCuuUCGGUGGuuauCUGGucUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 32992 | 0.7 | 0.946356 |
Target: 5'- cCCGGgccGGGCCGCCAcggGGGCCGGccguuGGc -3' miRNA: 3'- aGGCU---UUCGGUGGUua-UCUGGUCu----CC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 19358 | 0.7 | 0.946356 |
Target: 5'- cUCCGGGgggcccuacGGCCACCGAU--GCgGGGGGc -3' miRNA: 3'- -AGGCUU---------UCGGUGGUUAucUGgUCUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 150683 | 0.7 | 0.941724 |
Target: 5'- gCUGgcGGCCGCCGAUGG-CCAgucccgcccccGAGGc -3' miRNA: 3'- aGGCuuUCGGUGGUUAUCuGGU-----------CUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 130492 | 0.7 | 0.941724 |
Target: 5'- gCCGGcccAGGCCGCCG--AGA-CGGAGGa -3' miRNA: 3'- aGGCU---UUCGGUGGUuaUCUgGUCUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 76530 | 0.7 | 0.929576 |
Target: 5'- gCCG-AAGCCACCGAgcgggucacggcgGGGCUgcgGGAGGu -3' miRNA: 3'- aGGCuUUCGGUGGUUa------------UCUGG---UCUCC- -5' |
|||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 31883 | 0.71 | 0.924642 |
Target: 5'- cCCGGAcugaccuggccucuGGCCGCCAcaaaGGGCgGGGGGg -3' miRNA: 3'- aGGCUU--------------UCGGUGGUua--UCUGgUCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home