miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 5' -62.6 NC_001806.1 + 107219 0.65 0.630783
Target:  5'- -cCCUCggcguacgacgcagUGGCGCCCAGC-GCagCCCAu -3'
miRNA:   3'- gaGGAG--------------GCUGCGGGUCGuCGagGGGU- -5'
5558 5' -62.6 NC_001806.1 + 79670 0.66 0.627829
Target:  5'- gUCCgggucgcgcgcgcgCCGAcacCGCCgGGCAcGCUCCCUg -3'
miRNA:   3'- gAGGa-------------GGCU---GCGGgUCGU-CGAGGGGu -5'
5558 5' -62.6 NC_001806.1 + 23589 0.66 0.623892
Target:  5'- -cCCgcggCCGcCGCCCuggaGGCcuacuGCUCCCCGc -3'
miRNA:   3'- gaGGa---GGCuGCGGG----UCGu----CGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 23238 0.66 0.623892
Target:  5'- -gCCgCCGACGCgCUGGCGGCcgCCgCCGc -3'
miRNA:   3'- gaGGaGGCUGCG-GGUCGUCGa-GG-GGU- -5'
5558 5' -62.6 NC_001806.1 + 601 0.66 0.623892
Target:  5'- cCUCC-CCaGC-CCCAGCc-CUCCCCAg -3'
miRNA:   3'- -GAGGaGGcUGcGGGUCGucGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 150231 0.66 0.617987
Target:  5'- cCUCCcgCCGACGCaaCAGgGGCUuggccugcgucggugCCCCGg -3'
miRNA:   3'- -GAGGa-GGCUGCGg-GUCgUCGA---------------GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 5032 0.66 0.614053
Target:  5'- cCUCCUCCGucuccGCGCCCcacccgAG-GGCcCCCCGc -3'
miRNA:   3'- -GAGGAGGC-----UGCGGG------UCgUCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 23380 0.66 0.614053
Target:  5'- --gCUCgGACGCCCGcGCccccCUCCCCGc -3'
miRNA:   3'- gagGAGgCUGCGGGU-CGuc--GAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 126654 0.66 0.614053
Target:  5'- -aCCUCgGACGCCaCAcCAuCUCCCCc -3'
miRNA:   3'- gaGGAGgCUGCGG-GUcGUcGAGGGGu -5'
5558 5' -62.6 NC_001806.1 + 106785 0.66 0.614053
Target:  5'- -gCCUCCGcCGCgUgGGCGGCUaCCCGg -3'
miRNA:   3'- gaGGAGGCuGCG-GgUCGUCGAgGGGU- -5'
5558 5' -62.6 NC_001806.1 + 21843 0.66 0.594419
Target:  5'- uCUCCgaggCCG-CGCCCaagccccgggcGGCGGCgaggacCCCCGc -3'
miRNA:   3'- -GAGGa---GGCuGCGGG-----------UCGUCGa-----GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 84871 0.66 0.594419
Target:  5'- gCUCCUCUG-CGgCCGGCGGgaCUCUg -3'
miRNA:   3'- -GAGGAGGCuGCgGGUCGUCgaGGGGu -5'
5558 5' -62.6 NC_001806.1 + 106903 0.66 0.594419
Target:  5'- uCUCUUCUGGCGCCUAacGgGGCUgCUCGc -3'
miRNA:   3'- -GAGGAGGCUGCGGGU--CgUCGAgGGGU- -5'
5558 5' -62.6 NC_001806.1 + 57365 0.66 0.591482
Target:  5'- gUCCUCCGgggacACgGCCCGGUGGCUgucguugcggagcaUCCCGc -3'
miRNA:   3'- gAGGAGGC-----UG-CGGGUCGUCGA--------------GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 729 0.67 0.565176
Target:  5'- cCUCC-CCGGCGCguCCcGC-GCUCCCUc -3'
miRNA:   3'- -GAGGaGGCUGCG--GGuCGuCGAGGGGu -5'
5558 5' -62.6 NC_001806.1 + 147539 0.67 0.565176
Target:  5'- -cCCUCC-ACGCCCGGCc-C-CCCCGa -3'
miRNA:   3'- gaGGAGGcUGCGGGUCGucGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 1414 0.67 0.565176
Target:  5'- -cCCguggCCGAgGCCCAGCGaaUCCCgGg -3'
miRNA:   3'- gaGGa---GGCUgCGGGUCGUcgAGGGgU- -5'
5558 5' -62.6 NC_001806.1 + 22053 0.67 0.565176
Target:  5'- ----gCCGugGCCCGGCgccgGGC-CCCCGc -3'
miRNA:   3'- gaggaGGCugCGGGUCG----UCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 127055 0.67 0.565176
Target:  5'- gUUCUCCGGgGCCCGGCccugcuGCUgCCgAa -3'
miRNA:   3'- gAGGAGGCUgCGGGUCGu-----CGAgGGgU- -5'
5558 5' -62.6 NC_001806.1 + 49440 0.67 0.556472
Target:  5'- gUCCUCCGcAgGCCCGGCAGgggggauaccugggUCCCGu -3'
miRNA:   3'- gAGGAGGC-UgCGGGUCGUCga------------GGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.