miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 5' -56.5 NC_001806.1 + 101474 0.66 0.885531
Target:  5'- cGCCAaCCGCCgGgCCGGGACuGGAGc-- -3'
miRNA:   3'- -CGGUgGGUGGgU-GGUUCUG-CCUCauu -5'
5559 5' -56.5 NC_001806.1 + 57891 0.66 0.885531
Target:  5'- cGCCcCCCGagcgccCCCGCUuggucGugGGAGUGAc -3'
miRNA:   3'- -CGGuGGGU------GGGUGGuu---CugCCUCAUU- -5'
5559 5' -56.5 NC_001806.1 + 18247 0.66 0.892346
Target:  5'- uCCGCCCuuCCCGCCAuuaAGACGcuGGGa-- -3'
miRNA:   3'- cGGUGGGu-GGGUGGU---UCUGC--CUCauu -5'
5559 5' -56.5 NC_001806.1 + 21429 0.66 0.877775
Target:  5'- cGCCGCCCcggACCCccgccuuucgaGCCGAcgacgauGACGGGGa-- -3'
miRNA:   3'- -CGGUGGG---UGGG-----------UGGUU-------CUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 77479 0.67 0.805897
Target:  5'- gGCCgACCCGCagaugcugcgCCGCCGGGGCGaggcguaccugcGAGUGAg -3'
miRNA:   3'- -CGG-UGGGUG----------GGUGGUUCUGC------------CUCAUU- -5'
5559 5' -56.5 NC_001806.1 + 30942 0.67 0.840083
Target:  5'- cGCUACCUGCCCAUCu---CGGGGg-- -3'
miRNA:   3'- -CGGUGGGUGGGUGGuucuGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 103684 0.67 0.831803
Target:  5'- -gCACCCcCCCGCCcuccguggAGGugGGGGUu- -3'
miRNA:   3'- cgGUGGGuGGGUGG--------UUCugCCUCAuu -5'
5559 5' -56.5 NC_001806.1 + 5919 0.67 0.805897
Target:  5'- uGCCGCCCcCCCauugGCCGgcGGGCGGGa--- -3'
miRNA:   3'- -CGGUGGGuGGG----UGGU--UCUGCCUcauu -5'
5559 5' -56.5 NC_001806.1 + 73968 0.67 0.805897
Target:  5'- gGCCccucggcguaauGCCCGCCCcgGCCGGGGCGGc---- -3'
miRNA:   3'- -CGG------------UGGGUGGG--UGGUUCUGCCucauu -5'
5559 5' -56.5 NC_001806.1 + 4962 0.67 0.813829
Target:  5'- gGCCcuCCCGuCCCGCCGGgcgucgucgagucGugGGGGUGGu -3'
miRNA:   3'- -CGGu-GGGU-GGGUGGUU-------------CugCCUCAUU- -5'
5559 5' -56.5 NC_001806.1 + 118876 0.67 0.814702
Target:  5'- uGCCGCCUacguGCCCGCgGaugcGGugGGGGa-- -3'
miRNA:   3'- -CGGUGGG----UGGGUGgU----UCugCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 56165 0.67 0.82334
Target:  5'- aCCGCCCGCCCGuuGAcccCGGAGg-- -3'
miRNA:   3'- cGGUGGGUGGGUggUUcu-GCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 105667 0.67 0.831803
Target:  5'- cCCACCCcaACCC-CCAAGuuCGG-GUGAa -3'
miRNA:   3'- cGGUGGG--UGGGuGGUUCu-GCCuCAUU- -5'
5559 5' -56.5 NC_001806.1 + 43276 0.67 0.831803
Target:  5'- cGCgGCCguUCCGCCcucgGAGGCGGAGc-- -3'
miRNA:   3'- -CGgUGGguGGGUGG----UUCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 112243 0.67 0.840083
Target:  5'- gGCCGCCUGgCCACCAGGGUGGcccGGg-- -3'
miRNA:   3'- -CGGUGGGUgGGUGGUUCUGCC---UCauu -5'
5559 5' -56.5 NC_001806.1 + 8255 0.67 0.848172
Target:  5'- aGCCACCgCACCCuugggugCGGGugguACGGGGUGGu -3'
miRNA:   3'- -CGGUGG-GUGGGug-----GUUC----UGCCUCAUU- -5'
5559 5' -56.5 NC_001806.1 + 19849 0.67 0.848172
Target:  5'- uCCGCCCACCCAaggugcuuacCCGugcaaaaaAGGCGGAccgGUGGg -3'
miRNA:   3'- cGGUGGGUGGGU----------GGU--------UCUGCCU---CAUU- -5'
5559 5' -56.5 NC_001806.1 + 22890 0.67 0.848172
Target:  5'- gGCCgggGCCCgGCCCGCCAgccccccgcGGcCGGAGg-- -3'
miRNA:   3'- -CGG---UGGG-UGGGUGGU---------UCuGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 57770 0.67 0.848172
Target:  5'- cGCCGuCCCGUCCGCCGcauCGGAGUc- -3'
miRNA:   3'- -CGGU-GGGUGGGUGGUucuGCCUCAuu -5'
5559 5' -56.5 NC_001806.1 + 119194 0.68 0.759669
Target:  5'- cGCCGcCCCGCCgGCCGcGAaGGAGg-- -3'
miRNA:   3'- -CGGU-GGGUGGgUGGUuCUgCCUCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.