Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5559 | 5' | -56.5 | NC_001806.1 | + | 22743 | 0.68 | 0.759669 |
Target: 5'- cGCCGCCCGCCaCGCCGAcgccGACGa----- -3' miRNA: 3'- -CGGUGGGUGG-GUGGUU----CUGCcucauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 22890 | 0.67 | 0.848172 |
Target: 5'- gGCCgggGCCCgGCCCGCCAgccccccgcGGcCGGAGg-- -3' miRNA: 3'- -CGG---UGGG-UGGGUGGU---------UCuGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 23307 | 0.66 | 0.871229 |
Target: 5'- gGCCcgGCCCGgCCGCCcgGAGGCGGcGg-- -3' miRNA: 3'- -CGG--UGGGUgGGUGG--UUCUGCCuCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 26520 | 0.69 | 0.730494 |
Target: 5'- cGCCGCCC-CCCGCC-GGugGGc---- -3' miRNA: 3'- -CGGUGGGuGGGUGGuUCugCCucauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 27229 | 0.72 | 0.567739 |
Target: 5'- aGCCAgCCCGCCCucaCAGGGCGGGc--- -3' miRNA: 3'- -CGGU-GGGUGGGug-GUUCUGCCUcauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 29555 | 0.71 | 0.598286 |
Target: 5'- uGUCGCCCACCCACC----CGGAGc-- -3' miRNA: 3'- -CGGUGGGUGGGUGGuucuGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 29803 | 0.72 | 0.527674 |
Target: 5'- cGCCGCCgCGCCCcCCGugacGGGCGGGGc-- -3' miRNA: 3'- -CGGUGG-GUGGGuGGU----UCUGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 30279 | 0.73 | 0.469733 |
Target: 5'- cGCC-CCgGCCC-CCGGGGCGGAGc-- -3' miRNA: 3'- -CGGuGGgUGGGuGGUUCUGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 30299 | 0.68 | 0.796934 |
Target: 5'- nGCCGgCCGCCCGCCcc-GCGGAc--- -3' miRNA: 3'- -CGGUgGGUGGGUGGuucUGCCUcauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 30942 | 0.67 | 0.840083 |
Target: 5'- cGCUACCUGCCCAUCu---CGGGGg-- -3' miRNA: 3'- -CGGUGGGUGGGUGGuucuGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 31015 | 0.68 | 0.796934 |
Target: 5'- aCUGCCUGCCCAUCcuggacaugGAGACGGGGa-- -3' miRNA: 3'- cGGUGGGUGGGUGG---------UUCUGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 31125 | 0.72 | 0.567739 |
Target: 5'- aGCCGCCgCACCCugcuccCCGAGAcCGcGGGUAAc -3' miRNA: 3'- -CGGUGG-GUGGGu-----GGUUCU-GC-CUCAUU- -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 31873 | 0.66 | 0.876336 |
Target: 5'- cGCCuGCCCGCCCggacugaccugGCCucuggccgccacaaAGGGCGGGGg-- -3' miRNA: 3'- -CGG-UGGGUGGG-----------UGG--------------UUCUGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 32230 | 0.72 | 0.567739 |
Target: 5'- cGCgCACCCGCgCgGCCAGGugGGccGGUAc -3' miRNA: 3'- -CG-GUGGGUG-GgUGGUUCugCC--UCAUu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 37935 | 0.71 | 0.588069 |
Target: 5'- gGCCGuccgUCCACCCcgccCCGGGGCGGGGUc- -3' miRNA: 3'- -CGGU----GGGUGGGu---GGUUCUGCCUCAuu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 41417 | 0.72 | 0.577885 |
Target: 5'- aGCCGCCUGCCCAgCGcgccguGGuCGGGGUGc -3' miRNA: 3'- -CGGUGGGUGGGUgGU------UCuGCCUCAUu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 43276 | 0.67 | 0.831803 |
Target: 5'- cGCgGCCguUCCGCCcucgGAGGCGGAGc-- -3' miRNA: 3'- -CGgUGGguGGGUGG----UUCUGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 45493 | 0.71 | 0.588069 |
Target: 5'- cGCCugaACCCGCCCugUguggggugagGGGugGGGGUGGa -3' miRNA: 3'- -CGG---UGGGUGGGugG----------UUCugCCUCAUU- -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 46126 | 0.68 | 0.769179 |
Target: 5'- cGCCucCgCCACCCGCUggGucCGGAGg-- -3' miRNA: 3'- -CGGu-G-GGUGGGUGGuuCu-GCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 47192 | 0.71 | 0.629058 |
Target: 5'- aCCGCCCcCCCGCCcGGcCGGGGg-- -3' miRNA: 3'- cGGUGGGuGGGUGGuUCuGCCUCauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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