miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 5' -56.5 NC_001806.1 + 47192 0.71 0.629058
Target:  5'- aCCGCCCcCCCGCCcGGcCGGGGg-- -3'
miRNA:   3'- cGGUGGGuGGGUGGuUCuGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 20319 0.7 0.63933
Target:  5'- cCCGCCCGCCgGCCAAuGGgGGGGc-- -3'
miRNA:   3'- cGGUGGGUGGgUGGUU-CUgCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 96653 0.7 0.643438
Target:  5'- cGCCACCCugCgCgagcaccugcgggacAUCAAGGCGGAGa-- -3'
miRNA:   3'- -CGGUGGGugG-G---------------UGGUUCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 1546 0.7 0.659849
Target:  5'- cGCgGCCCGCgCCACCGGGcCGGGc--- -3'
miRNA:   3'- -CGgUGGGUG-GGUGGUUCuGCCUcauu -5'
5559 5' -56.5 NC_001806.1 + 85863 0.69 0.700548
Target:  5'- cGCCGCCC-CCaa-CAGGugGGAGa-- -3'
miRNA:   3'- -CGGUGGGuGGgugGUUCugCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 5638 0.69 0.700548
Target:  5'- cCCGCCCAUCCgcGCCAucugccauGGGCGGGGc-- -3'
miRNA:   3'- cGGUGGGUGGG--UGGU--------UCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 26520 0.69 0.730494
Target:  5'- cGCCGCCC-CCCGCC-GGugGGc---- -3'
miRNA:   3'- -CGGUGGGuGGGUGGuUCugCCucauu -5'
5559 5' -56.5 NC_001806.1 + 96535 0.69 0.740317
Target:  5'- cGCCGCCCGCCCcuggcGCCcccccaACGGGGg-- -3'
miRNA:   3'- -CGGUGGGUGGG-----UGGuuc---UGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 12620 0.69 0.750045
Target:  5'- cCCcCCgCACCCAUUAAGGgGGGGUAu -3'
miRNA:   3'- cGGuGG-GUGGGUGGUUCUgCCUCAUu -5'
5559 5' -56.5 NC_001806.1 + 119194 0.68 0.759669
Target:  5'- cGCCGcCCCGCCgGCCGcGAaGGAGg-- -3'
miRNA:   3'- -CGGU-GGGUGGgUGGUuCUgCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 22743 0.68 0.759669
Target:  5'- cGCCGCCCGCCaCGCCGAcgccGACGa----- -3'
miRNA:   3'- -CGGUGGGUGG-GUGGUU----CUGCcucauu -5'
5559 5' -56.5 NC_001806.1 + 46126 0.68 0.769179
Target:  5'- cGCCucCgCCACCCGCUggGucCGGAGg-- -3'
miRNA:   3'- -CGGu-G-GGUGGGUGGuuCu-GCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 116437 0.68 0.778566
Target:  5'- aGCCucguCCCGCCCguguucgaggGCCAAgcGACGGAcGUGc -3'
miRNA:   3'- -CGGu---GGGUGGG----------UGGUU--CUGCCU-CAUu -5'
5559 5' -56.5 NC_001806.1 + 72930 0.68 0.778566
Target:  5'- cGCCGCCgACCCACCuGGACu------ -3'
miRNA:   3'- -CGGUGGgUGGGUGGuUCUGccucauu -5'
5559 5' -56.5 NC_001806.1 + 21579 0.68 0.78782
Target:  5'- uGUCGCCgCGCCCGCCGgcccAGccgccGCGGAGa-- -3'
miRNA:   3'- -CGGUGG-GUGGGUGGU----UC-----UGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 138936 0.68 0.78782
Target:  5'- uGCCACUaCACCC-CCGGGGaacCGGAGa-- -3'
miRNA:   3'- -CGGUGG-GUGGGuGGUUCU---GCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 78624 0.68 0.78782
Target:  5'- cGCCACCCACCgCACCcccGCGGc---- -3'
miRNA:   3'- -CGGUGGGUGG-GUGGuucUGCCucauu -5'
5559 5' -56.5 NC_001806.1 + 31015 0.68 0.796934
Target:  5'- aCUGCCUGCCCAUCcuggacaugGAGACGGGGa-- -3'
miRNA:   3'- cGGUGGGUGGGUGG---------UUCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 22702 0.68 0.796934
Target:  5'- uCCGCCgCGCCCGCCucccccGCGGGGg-- -3'
miRNA:   3'- cGGUGG-GUGGGUGGuuc---UGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 30299 0.68 0.796934
Target:  5'- nGCCGgCCGCCCGCCcc-GCGGAc--- -3'
miRNA:   3'- -CGGUgGGUGGGUGGuucUGCCUcauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.