Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5559 | 5' | -56.5 | NC_001806.1 | + | 37935 | 0.71 | 0.588069 |
Target: 5'- gGCCGuccgUCCACCCcgccCCGGGGCGGGGUc- -3' miRNA: 3'- -CGGU----GGGUGGGu---GGUUCUGCCUCAuu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 20319 | 0.7 | 0.63933 |
Target: 5'- cCCGCCCGCCgGCCAAuGGgGGGGc-- -3' miRNA: 3'- cGGUGGGUGGgUGGUU-CUgCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 96653 | 0.7 | 0.643438 |
Target: 5'- cGCCACCCugCgCgagcaccugcgggacAUCAAGGCGGAGa-- -3' miRNA: 3'- -CGGUGGGugG-G---------------UGGUUCUGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 1546 | 0.7 | 0.659849 |
Target: 5'- cGCgGCCCGCgCCACCGGGcCGGGc--- -3' miRNA: 3'- -CGgUGGGUG-GGUGGUUCuGCCUcauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 12620 | 0.69 | 0.750045 |
Target: 5'- cCCcCCgCACCCAUUAAGGgGGGGUAu -3' miRNA: 3'- cGGuGG-GUGGGUGGUUCUgCCUCAUu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 96535 | 0.69 | 0.740317 |
Target: 5'- cGCCGCCCGCCCcuggcGCCcccccaACGGGGg-- -3' miRNA: 3'- -CGGUGGGUGGG-----UGGuuc---UGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 26520 | 0.69 | 0.730494 |
Target: 5'- cGCCGCCC-CCCGCC-GGugGGc---- -3' miRNA: 3'- -CGGUGGGuGGGUGGuUCugCCucauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 5638 | 0.69 | 0.700548 |
Target: 5'- cCCGCCCAUCCgcGCCAucugccauGGGCGGGGc-- -3' miRNA: 3'- cGGUGGGUGGG--UGGU--------UCUGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 85863 | 0.69 | 0.700548 |
Target: 5'- cGCCGCCC-CCaa-CAGGugGGAGa-- -3' miRNA: 3'- -CGGUGGGuGGgugGUUCugCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 30299 | 0.68 | 0.796934 |
Target: 5'- nGCCGgCCGCCCGCCcc-GCGGAc--- -3' miRNA: 3'- -CGGUgGGUGGGUGGuucUGCCUcauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 22702 | 0.68 | 0.796934 |
Target: 5'- uCCGCCgCGCCCGCCucccccGCGGGGg-- -3' miRNA: 3'- cGGUGG-GUGGGUGGuuc---UGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 31015 | 0.68 | 0.796934 |
Target: 5'- aCUGCCUGCCCAUCcuggacaugGAGACGGGGa-- -3' miRNA: 3'- cGGUGGGUGGGUGG---------UUCUGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 78624 | 0.68 | 0.78782 |
Target: 5'- cGCCACCCACCgCACCcccGCGGc---- -3' miRNA: 3'- -CGGUGGGUGG-GUGGuucUGCCucauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 138936 | 0.68 | 0.78782 |
Target: 5'- uGCCACUaCACCC-CCGGGGaacCGGAGa-- -3' miRNA: 3'- -CGGUGG-GUGGGuGGUUCU---GCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 21579 | 0.68 | 0.78782 |
Target: 5'- uGUCGCCgCGCCCGCCGgcccAGccgccGCGGAGa-- -3' miRNA: 3'- -CGGUGG-GUGGGUGGU----UC-----UGCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 72930 | 0.68 | 0.778566 |
Target: 5'- cGCCGCCgACCCACCuGGACu------ -3' miRNA: 3'- -CGGUGGgUGGGUGGuUCUGccucauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 116437 | 0.68 | 0.778566 |
Target: 5'- aGCCucguCCCGCCCguguucgaggGCCAAgcGACGGAcGUGc -3' miRNA: 3'- -CGGu---GGGUGGG----------UGGUU--CUGCCU-CAUu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 46126 | 0.68 | 0.769179 |
Target: 5'- cGCCucCgCCACCCGCUggGucCGGAGg-- -3' miRNA: 3'- -CGGu-G-GGUGGGUGGuuCu-GCCUCauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 22743 | 0.68 | 0.759669 |
Target: 5'- cGCCGCCCGCCaCGCCGAcgccGACGa----- -3' miRNA: 3'- -CGGUGGGUGG-GUGGUU----CUGCcucauu -5' |
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5559 | 5' | -56.5 | NC_001806.1 | + | 119194 | 0.68 | 0.759669 |
Target: 5'- cGCCGcCCCGCCgGCCGcGAaGGAGg-- -3' miRNA: 3'- -CGGU-GGGUGGgUGGUuCUgCCUCauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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