Results 1 - 20 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5562 | 3' | -57.2 | NC_001806.1 | + | 8261 | 0.66 | 0.903099 |
Target: 5'- cGCACCCuugGguGCGGGU---GGUACGGg -3' miRNA: 3'- cCGUGGG---CguUGCUCAgugCCGUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 138446 | 0.66 | 0.903099 |
Target: 5'- uGGUcgugGCCCGCAACGAcGUCACu-UACGu -3' miRNA: 3'- -CCG----UGGGCGUUGCU-CAGUGccGUGCc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 102213 | 0.66 | 0.903099 |
Target: 5'- cGGuUGCCCGCAGCaGAGUCugGuccuccCACaGGa -3' miRNA: 3'- -CC-GUGGGCGUUG-CUCAGugCc-----GUG-CC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 34348 | 0.66 | 0.903099 |
Target: 5'- cGGCcCCCGgGgaACGGGggacCGgGGCugGGu -3' miRNA: 3'- -CCGuGGGCgU--UGCUCa---GUgCCGugCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 151128 | 0.66 | 0.902483 |
Target: 5'- cGGCGCCCccuccccGCccGCGcGUCGCaGGCGCaGGc -3' miRNA: 3'- -CCGUGGG-------CGu-UGCuCAGUG-CCGUG-CC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 24859 | 0.66 | 0.900625 |
Target: 5'- cGGCACCgugcuggcgGCGGCGGGggccguggaggugCugGGgGCGGa -3' miRNA: 3'- -CCGUGGg--------CGUUGCUCa------------GugCCgUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 48753 | 0.66 | 0.896847 |
Target: 5'- cGGgACCgCGCAACcaacccacugGGGUCugGGUugcCGGc -3' miRNA: 3'- -CCgUGG-GCGUUG----------CUCAGugCCGu--GCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 111313 | 0.66 | 0.896847 |
Target: 5'- uGCACCCGUcgcguucuAACGGGgg-UGGgGCGGg -3' miRNA: 3'- cCGUGGGCG--------UUGCUCaguGCCgUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 20315 | 0.66 | 0.896847 |
Target: 5'- cGGUcccGCCCGCcggccaAugGGGggGCGGCaagGCGGg -3' miRNA: 3'- -CCG---UGGGCG------UugCUCagUGCCG---UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 22559 | 0.66 | 0.896847 |
Target: 5'- cGGCGCugacgggggCCGCGGgGAGcCcCGGCGcCGGc -3' miRNA: 3'- -CCGUG---------GGCGUUgCUCaGuGCCGU-GCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 122336 | 0.66 | 0.896847 |
Target: 5'- uGGCGCCgGgGgACGAGaaaCACGGUggcgcgcugGCGGa -3' miRNA: 3'- -CCGUGGgCgU-UGCUCa--GUGCCG---------UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 3483 | 0.66 | 0.896847 |
Target: 5'- nGCGCCCG--GCGucGUCGuCGGCGuCGGc -3' miRNA: 3'- cCGUGGGCguUGCu-CAGU-GCCGU-GCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 3558 | 0.66 | 0.896847 |
Target: 5'- cGGCggacagccGCCCcaggGCGGCGAGgaucccCGCGGCGCc- -3' miRNA: 3'- -CCG--------UGGG----CGUUGCUCa-----GUGCCGUGcc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 44458 | 0.66 | 0.89621 |
Target: 5'- cGGCGUCCGCGugGAG-CAUGcggagggauggcuGCACGa -3' miRNA: 3'- -CCGUGGGCGUugCUCaGUGC-------------CGUGCc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 150399 | 0.66 | 0.89557 |
Target: 5'- aGCauaACCCGgAACcccagggGAGUgguuacgCGCGGCGCGGg -3' miRNA: 3'- cCG---UGGGCgUUG-------CUCA-------GUGCCGUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 126487 | 0.66 | 0.890376 |
Target: 5'- cGCGCCCG-GGCGcGUCccCGGCcCGGa -3' miRNA: 3'- cCGUGGGCgUUGCuCAGu-GCCGuGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 3324 | 0.66 | 0.890376 |
Target: 5'- cGGgGCCCGC---GGGUCccucCGGcCGCGGg -3' miRNA: 3'- -CCgUGGGCGuugCUCAGu---GCC-GUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 116965 | 0.66 | 0.890376 |
Target: 5'- uGGCuCCCGUgguuCGGGugugcaccuuUgACGGCGCGGc -3' miRNA: 3'- -CCGuGGGCGuu--GCUC----------AgUGCCGUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 70641 | 0.66 | 0.890376 |
Target: 5'- cGCACCUggggguguGCGACGAGcUgGCGGCccaGGu -3' miRNA: 3'- cCGUGGG--------CGUUGCUC-AgUGCCGug-CC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 66531 | 0.66 | 0.890376 |
Target: 5'- cGGCcagGCCCGCGAgGgggaAGUCGgGGUuuCGGu -3' miRNA: 3'- -CCG---UGGGCGUUgC----UCAGUgCCGu-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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