miRNA display CGI


Results 1 - 20 of 183 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 8261 0.66 0.903099
Target:  5'- cGCACCCuugGguGCGGGU---GGUACGGg -3'
miRNA:   3'- cCGUGGG---CguUGCUCAgugCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 138446 0.66 0.903099
Target:  5'- uGGUcgugGCCCGCAACGAcGUCACu-UACGu -3'
miRNA:   3'- -CCG----UGGGCGUUGCU-CAGUGccGUGCc -5'
5562 3' -57.2 NC_001806.1 + 102213 0.66 0.903099
Target:  5'- cGGuUGCCCGCAGCaGAGUCugGuccuccCACaGGa -3'
miRNA:   3'- -CC-GUGGGCGUUG-CUCAGugCc-----GUG-CC- -5'
5562 3' -57.2 NC_001806.1 + 34348 0.66 0.903099
Target:  5'- cGGCcCCCGgGgaACGGGggacCGgGGCugGGu -3'
miRNA:   3'- -CCGuGGGCgU--UGCUCa---GUgCCGugCC- -5'
5562 3' -57.2 NC_001806.1 + 151128 0.66 0.902483
Target:  5'- cGGCGCCCccuccccGCccGCGcGUCGCaGGCGCaGGc -3'
miRNA:   3'- -CCGUGGG-------CGu-UGCuCAGUG-CCGUG-CC- -5'
5562 3' -57.2 NC_001806.1 + 24859 0.66 0.900625
Target:  5'- cGGCACCgugcuggcgGCGGCGGGggccguggaggugCugGGgGCGGa -3'
miRNA:   3'- -CCGUGGg--------CGUUGCUCa------------GugCCgUGCC- -5'
5562 3' -57.2 NC_001806.1 + 48753 0.66 0.896847
Target:  5'- cGGgACCgCGCAACcaacccacugGGGUCugGGUugcCGGc -3'
miRNA:   3'- -CCgUGG-GCGUUG----------CUCAGugCCGu--GCC- -5'
5562 3' -57.2 NC_001806.1 + 111313 0.66 0.896847
Target:  5'- uGCACCCGUcgcguucuAACGGGgg-UGGgGCGGg -3'
miRNA:   3'- cCGUGGGCG--------UUGCUCaguGCCgUGCC- -5'
5562 3' -57.2 NC_001806.1 + 20315 0.66 0.896847
Target:  5'- cGGUcccGCCCGCcggccaAugGGGggGCGGCaagGCGGg -3'
miRNA:   3'- -CCG---UGGGCG------UugCUCagUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 22559 0.66 0.896847
Target:  5'- cGGCGCugacgggggCCGCGGgGAGcCcCGGCGcCGGc -3'
miRNA:   3'- -CCGUG---------GGCGUUgCUCaGuGCCGU-GCC- -5'
5562 3' -57.2 NC_001806.1 + 122336 0.66 0.896847
Target:  5'- uGGCGCCgGgGgACGAGaaaCACGGUggcgcgcugGCGGa -3'
miRNA:   3'- -CCGUGGgCgU-UGCUCa--GUGCCG---------UGCC- -5'
5562 3' -57.2 NC_001806.1 + 3483 0.66 0.896847
Target:  5'- nGCGCCCG--GCGucGUCGuCGGCGuCGGc -3'
miRNA:   3'- cCGUGGGCguUGCu-CAGU-GCCGU-GCC- -5'
5562 3' -57.2 NC_001806.1 + 3558 0.66 0.896847
Target:  5'- cGGCggacagccGCCCcaggGCGGCGAGgaucccCGCGGCGCc- -3'
miRNA:   3'- -CCG--------UGGG----CGUUGCUCa-----GUGCCGUGcc -5'
5562 3' -57.2 NC_001806.1 + 44458 0.66 0.89621
Target:  5'- cGGCGUCCGCGugGAG-CAUGcggagggauggcuGCACGa -3'
miRNA:   3'- -CCGUGGGCGUugCUCaGUGC-------------CGUGCc -5'
5562 3' -57.2 NC_001806.1 + 150399 0.66 0.89557
Target:  5'- aGCauaACCCGgAACcccagggGAGUgguuacgCGCGGCGCGGg -3'
miRNA:   3'- cCG---UGGGCgUUG-------CUCA-------GUGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 126487 0.66 0.890376
Target:  5'- cGCGCCCG-GGCGcGUCccCGGCcCGGa -3'
miRNA:   3'- cCGUGGGCgUUGCuCAGu-GCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 3324 0.66 0.890376
Target:  5'- cGGgGCCCGC---GGGUCccucCGGcCGCGGg -3'
miRNA:   3'- -CCgUGGGCGuugCUCAGu---GCC-GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 116965 0.66 0.890376
Target:  5'- uGGCuCCCGUgguuCGGGugugcaccuuUgACGGCGCGGc -3'
miRNA:   3'- -CCGuGGGCGuu--GCUC----------AgUGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 70641 0.66 0.890376
Target:  5'- cGCACCUggggguguGCGACGAGcUgGCGGCccaGGu -3'
miRNA:   3'- cCGUGGG--------CGUUGCUC-AgUGCCGug-CC- -5'
5562 3' -57.2 NC_001806.1 + 66531 0.66 0.890376
Target:  5'- cGGCcagGCCCGCGAgGgggaAGUCGgGGUuuCGGu -3'
miRNA:   3'- -CCG---UGGGCGUUgC----UCAGUgCCGu-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.