Results 1 - 20 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5563 | 5' | -65.4 | NC_001806.1 | + | 134226 | 0.66 | 0.532282 |
Target: 5'- -aUAGGCCacgcaGUCGgagcgggggGGCGGCC-CCgGCa -3' miRNA: 3'- agGUCCGG-----CAGCa--------CCGCCGGcGGgCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 23065 | 0.76 | 0.115978 |
Target: 5'- gCgAGGCCGcCGUGGCcGCCGUgCGCg -3' miRNA: 3'- aGgUCCGGCaGCACCGcCGGCGgGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 86653 | 0.76 | 0.115978 |
Target: 5'- cCCAcGGCCGUCagcccGGCGGCCGUgaggCCGCg -3' miRNA: 3'- aGGU-CCGGCAGca---CCGCCGGCG----GGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 102191 | 0.76 | 0.121771 |
Target: 5'- cCCAgGGCCGUUaugGUGuucGCGGuuGCCCGCa -3' miRNA: 3'- aGGU-CCGGCAG---CAC---CGCCggCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 21915 | 0.75 | 0.13745 |
Target: 5'- gCCGGGCCcgcgCGgcGGUGGCCGgCCGCg -3' miRNA: 3'- aGGUCCGGca--GCa-CCGCCGGCgGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 77384 | 0.75 | 0.144226 |
Target: 5'- -aCGGGCgCGggCGcGGCGGCCgcGCCCGCg -3' miRNA: 3'- agGUCCG-GCa-GCaCCGCCGG--CGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 81354 | 0.75 | 0.151306 |
Target: 5'- aCCAGGCgGcCGgGGC-GUCGCCCGCg -3' miRNA: 3'- aGGUCCGgCaGCaCCGcCGGCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 22389 | 0.75 | 0.152759 |
Target: 5'- -gCGGGCCGUgccccaccugggcuaCGccaUGGCGGCCGgCCGCu -3' miRNA: 3'- agGUCCGGCA---------------GC---ACCGCCGGCgGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 32942 | 0.74 | 0.162518 |
Target: 5'- gCCGGGCCGUUGUGG-GGCCccggGCCgGg -3' miRNA: 3'- aGGUCCGGCAGCACCgCCGG----CGGgCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 120124 | 0.77 | 0.111529 |
Target: 5'- aUCCGGGCCG-CGcuucagGGCGGCCcgcgaaucucacagcGCCUGCg -3' miRNA: 3'- -AGGUCCGGCaGCa-----CCGCCGG---------------CGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 127768 | 0.77 | 0.110442 |
Target: 5'- -gCGGGCC--UGUGGCGGCCGUCuCGCg -3' miRNA: 3'- agGUCCGGcaGCACCGCCGGCGG-GCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 23313 | 0.77 | 0.105155 |
Target: 5'- gCCcGGCCGccCGgaGGCGGCgGCCCGCg -3' miRNA: 3'- aGGuCCGGCa-GCa-CCGCCGgCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 22787 | 0.85 | 0.027644 |
Target: 5'- cCCAGGCCGgccgCGUGGCcgucgagugccuGGCCGCCUGCc -3' miRNA: 3'- aGGUCCGGCa---GCACCG------------CCGGCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 38383 | 0.82 | 0.044889 |
Target: 5'- uUCCAGGUCGUCGcGGCGGCucucCGCCgGCu -3' miRNA: 3'- -AGGUCCGGCAGCaCCGCCG----GCGGgCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 23467 | 0.8 | 0.063941 |
Target: 5'- cCCGGGCCGcCGcGGCgcaGGcCCGCCCGCg -3' miRNA: 3'- aGGUCCGGCaGCaCCG---CC-GGCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 73453 | 0.78 | 0.088468 |
Target: 5'- cCCAGGCCGggGUGGcCGGCCcGgCCGCc -3' miRNA: 3'- aGGUCCGGCagCACC-GCCGG-CgGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 144949 | 0.78 | 0.09296 |
Target: 5'- gCCAacGGCCGgccccCGUGGCGGCCcgGCCCGg -3' miRNA: 3'- aGGU--CCGGCa----GCACCGCCGG--CGGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 50401 | 0.77 | 0.097669 |
Target: 5'- cUCUcGGUgGUCGUGGgGGCgCGCCUGCa -3' miRNA: 3'- -AGGuCCGgCAGCACCgCCG-GCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 79723 | 0.77 | 0.099369 |
Target: 5'- cCCAGGCUucCGcgaccacccaggguUGGCGGCCGCCUGCc -3' miRNA: 3'- aGGUCCGGcaGC--------------ACCGCCGGCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 128035 | 0.77 | 0.105155 |
Target: 5'- gCCAGGCCGacgaugccCGUGGCGGCCacgGCCCcCa -3' miRNA: 3'- aGGUCCGGCa-------GCACCGCCGG---CGGGcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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