miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5565 3' -53.8 NC_001806.1 + 139806 0.71 0.821849
Target:  5'- gCA-CCCgCGCGAUCAugGUacgggGCCGGGa -3'
miRNA:   3'- aGUaGGG-GUGCUAGUugCAg----UGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 135063 0.7 0.854728
Target:  5'- cCggCCCCGCGGg-GACG-CGCCGGGc -3'
miRNA:   3'- aGuaGGGGUGCUagUUGCaGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 130718 1.01 0.017486
Target:  5'- gUCAUCCCCACGAUCAACGUC-CCGGAg -3'
miRNA:   3'- -AGUAGGGGUGCUAGUUGCAGuGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 121839 0.66 0.958835
Target:  5'- aCAUCCCCcCGAcCAGC---GCCGGGu -3'
miRNA:   3'- aGUAGGGGuGCUaGUUGcagUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 117954 0.68 0.916322
Target:  5'- aCcgCCCgACGA-CAGCGaCGCCGGu -3'
miRNA:   3'- aGuaGGGgUGCUaGUUGCaGUGGCCu -5'
5565 3' -53.8 NC_001806.1 + 116305 0.69 0.869975
Target:  5'- --uUCCCCGCGGUCA---UCACcCGGGu -3'
miRNA:   3'- aguAGGGGUGCUAGUugcAGUG-GCCU- -5'
5565 3' -53.8 NC_001806.1 + 107370 0.72 0.738552
Target:  5'- gCGUCCCCucgGCGGUgCAGCGggaacgcgccCGCCGGAg -3'
miRNA:   3'- aGUAGGGG---UGCUA-GUUGCa---------GUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 103881 0.66 0.968856
Target:  5'- gCAUCCgCACGAcugCggUGauaUUACCGGAg -3'
miRNA:   3'- aGUAGGgGUGCUa--GuuGC---AGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 102993 0.68 0.916322
Target:  5'- cUCAUCCCCGCGcgCGGCaucCGCCu-- -3'
miRNA:   3'- -AGUAGGGGUGCuaGUUGca-GUGGccu -5'
5565 3' -53.8 NC_001806.1 + 99799 0.66 0.965732
Target:  5'- -gGUCCCCcaccugaggGCGAUaguGCGcCACCGGc -3'
miRNA:   3'- agUAGGGG---------UGCUAgu-UGCaGUGGCCu -5'
5565 3' -53.8 NC_001806.1 + 91901 0.7 0.854728
Target:  5'- -gGUCCCCACGGcCAugGggcgGCUGGAg -3'
miRNA:   3'- agUAGGGGUGCUaGUugCag--UGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 86058 0.74 0.616848
Target:  5'- cUCGUCCCCugGGgcggCGGCGUCuagcuCgCGGAg -3'
miRNA:   3'- -AGUAGGGGugCUa---GUUGCAGu----G-GCCU- -5'
5565 3' -53.8 NC_001806.1 + 79456 0.68 0.916322
Target:  5'- cCGUCCCCACGuccCAGUGUgCACCGcGGc -3'
miRNA:   3'- aGUAGGGGUGCua-GUUGCA-GUGGC-CU- -5'
5565 3' -53.8 NC_001806.1 + 69424 0.7 0.846796
Target:  5'- gCGUCCCCGCGcg-GACGccCACCGGc -3'
miRNA:   3'- aGUAGGGGUGCuagUUGCa-GUGGCCu -5'
5565 3' -53.8 NC_001806.1 + 68525 0.73 0.678397
Target:  5'- cCAUCCUCGCGGUCAccggcuccgacACGUCccaugcGCUGGAu -3'
miRNA:   3'- aGUAGGGGUGCUAGU-----------UGCAG------UGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 68048 0.66 0.962393
Target:  5'- gUCAUUCCCGCccGGUCu-CGUCGuuGGu -3'
miRNA:   3'- -AGUAGGGGUG--CUAGuuGCAGUggCCu -5'
5565 3' -53.8 NC_001806.1 + 60581 0.77 0.496421
Target:  5'- ---cCCCCugGAUCcccggGACGUUACCGGGg -3'
miRNA:   3'- aguaGGGGugCUAG-----UUGCAGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 60256 0.75 0.565791
Target:  5'- aCAUUCCCACGAUCAACuGUCGCg--- -3'
miRNA:   3'- aGUAGGGGUGCUAGUUG-CAGUGgccu -5'
5565 3' -53.8 NC_001806.1 + 58235 0.66 0.965732
Target:  5'- ---cCCCCGcCGAcCuGCaGUCGCCGGAg -3'
miRNA:   3'- aguaGGGGU-GCUaGuUG-CAGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 56269 0.74 0.616848
Target:  5'- cCGUCCCCGgGGUCcuuccugugcaGGCGaCGCCGGAg -3'
miRNA:   3'- aGUAGGGGUgCUAG-----------UUGCaGUGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.