Results 1 - 20 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 132076 | 0.66 | 0.700147 |
Target: 5'- gGGCCC-GCCCgCCGCCCcucGCGc-- -3' miRNA: 3'- -CCGGGaCGGGgGGUGGGacuUGCauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 99792 | 0.66 | 0.700147 |
Target: 5'- uGGUUCcgGUCCCCCACCUgaGGGCGa-- -3' miRNA: 3'- -CCGGGa-CGGGGGGUGGGa-CUUGCauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 43407 | 0.66 | 0.700147 |
Target: 5'- aGGCCCgcgccuugGCCCgcacguaCCACgCCUGcAugGUGAa -3' miRNA: 3'- -CCGGGa-------CGGGg------GGUG-GGAC-UugCAUU- -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 100580 | 0.66 | 0.690302 |
Target: 5'- aGGCUCcGCCCCCCACauuUUGAAUu--- -3' miRNA: 3'- -CCGGGaCGGGGGGUGg--GACUUGcauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 69961 | 0.66 | 0.690302 |
Target: 5'- gGGCUUcGUCCCCUacguucugGCCCUGGugGUc- -3' miRNA: 3'- -CCGGGaCGGGGGG--------UGGGACUugCAuu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 105148 | 0.66 | 0.690302 |
Target: 5'- cGGCCgUGCCgCCCCAgggugccgagcCCCaGAGCa--- -3' miRNA: 3'- -CCGGgACGG-GGGGU-----------GGGaCUUGcauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 58703 | 0.66 | 0.68041 |
Target: 5'- uGGCCCgugaucGCCaaCUCCACCC--GACGUAGg -3' miRNA: 3'- -CCGGGa-----CGG--GGGGUGGGacUUGCAUU- -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 150598 | 0.66 | 0.677435 |
Target: 5'- cGGCCCgGCCCauugggcgguaacuCCCGCCCaaUGGGCc--- -3' miRNA: 3'- -CCGGGaCGGG--------------GGGUGGG--ACUUGcauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 26265 | 0.66 | 0.67048 |
Target: 5'- aGCCCggGCCCCCCgcgGCCgaGAcuaGCGa-- -3' miRNA: 3'- cCGGGa-CGGGGGG---UGGgaCU---UGCauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 68072 | 0.66 | 0.67048 |
Target: 5'- uGGUCuacgCUGUCCCCCACCCacgcgagccGGGCGUc- -3' miRNA: 3'- -CCGG----GACGGGGGGUGGGa--------CUUGCAuu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 65645 | 0.66 | 0.67048 |
Target: 5'- gGGCCCcgGCggCCUCC-CCCUGggUGg-- -3' miRNA: 3'- -CCGGGa-CG--GGGGGuGGGACuuGCauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 20586 | 0.66 | 0.660521 |
Target: 5'- cGCCCUcGCgCCCCGCCCaUGGcagauggcGCGg-- -3' miRNA: 3'- cCGGGA-CGgGGGGUGGG-ACU--------UGCauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 55032 | 0.66 | 0.660521 |
Target: 5'- cGGCCgUGCaCgUCGCCUUGAACGg-- -3' miRNA: 3'- -CCGGgACGgGgGGUGGGACUUGCauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 108176 | 0.66 | 0.660521 |
Target: 5'- cGCCCggguuucugGCCgCCUCugCgCUGGGCGUGGu -3' miRNA: 3'- cCGGGa--------CGG-GGGGugG-GACUUGCAUU- -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 92106 | 0.66 | 0.659523 |
Target: 5'- gGGCCgUGCCCCCUGCUucagcuuCUcGGGCGg-- -3' miRNA: 3'- -CCGGgACGGGGGGUGG-------GA-CUUGCauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 139246 | 0.66 | 0.657528 |
Target: 5'- uGGCCgaguuacuggaagagGCCCCCCugCCUu-ACGUGGu -3' miRNA: 3'- -CCGGga-------------CGGGGGGugGGAcuUGCAUU- -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 113713 | 0.66 | 0.654534 |
Target: 5'- aGGCCCUGgCCCagcugguugaugacuUUACCCUGAcCGg-- -3' miRNA: 3'- -CCGGGACgGGG---------------GGUGGGACUuGCauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 112041 | 0.66 | 0.65054 |
Target: 5'- cGCCCUGCUCacgggggagGCCCUGGACGg-- -3' miRNA: 3'- cCGGGACGGGggg------UGGGACUUGCauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 53341 | 0.67 | 0.640544 |
Target: 5'- cGGCCCga-CCaacgucgCCGCCCUGAGCGc-- -3' miRNA: 3'- -CCGGGacgGGg------GGUGGGACUUGCauu -5' |
|||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 114537 | 0.67 | 0.640544 |
Target: 5'- cGCCCaauuuCCCCCCgGCCCUGcGCGa-- -3' miRNA: 3'- cCGGGac---GGGGGG-UGGGACuUGCauu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home