miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5565 5' -60.8 NC_001806.1 + 99792 0.66 0.700147
Target:  5'- uGGUUCcgGUCCCCCACCUgaGGGCGa-- -3'
miRNA:   3'- -CCGGGa-CGGGGGGUGGGa-CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 43407 0.66 0.700147
Target:  5'- aGGCCCgcgccuugGCCCgcacguaCCACgCCUGcAugGUGAa -3'
miRNA:   3'- -CCGGGa-------CGGGg------GGUG-GGAC-UugCAUU- -5'
5565 5' -60.8 NC_001806.1 + 132076 0.66 0.700147
Target:  5'- gGGCCC-GCCCgCCGCCCcucGCGc-- -3'
miRNA:   3'- -CCGGGaCGGGgGGUGGGacuUGCauu -5'
5565 5' -60.8 NC_001806.1 + 105148 0.66 0.690302
Target:  5'- cGGCCgUGCCgCCCCAgggugccgagcCCCaGAGCa--- -3'
miRNA:   3'- -CCGGgACGG-GGGGU-----------GGGaCUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 100580 0.66 0.690302
Target:  5'- aGGCUCcGCCCCCCACauuUUGAAUu--- -3'
miRNA:   3'- -CCGGGaCGGGGGGUGg--GACUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 69961 0.66 0.690302
Target:  5'- gGGCUUcGUCCCCUacguucugGCCCUGGugGUc- -3'
miRNA:   3'- -CCGGGaCGGGGGG--------UGGGACUugCAuu -5'
5565 5' -60.8 NC_001806.1 + 58703 0.66 0.68041
Target:  5'- uGGCCCgugaucGCCaaCUCCACCC--GACGUAGg -3'
miRNA:   3'- -CCGGGa-----CGG--GGGGUGGGacUUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 150598 0.66 0.677435
Target:  5'- cGGCCCgGCCCauugggcgguaacuCCCGCCCaaUGGGCc--- -3'
miRNA:   3'- -CCGGGaCGGG--------------GGGUGGG--ACUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 65645 0.66 0.67048
Target:  5'- gGGCCCcgGCggCCUCC-CCCUGggUGg-- -3'
miRNA:   3'- -CCGGGa-CG--GGGGGuGGGACuuGCauu -5'
5565 5' -60.8 NC_001806.1 + 68072 0.66 0.67048
Target:  5'- uGGUCuacgCUGUCCCCCACCCacgcgagccGGGCGUc- -3'
miRNA:   3'- -CCGG----GACGGGGGGUGGGa--------CUUGCAuu -5'
5565 5' -60.8 NC_001806.1 + 26265 0.66 0.67048
Target:  5'- aGCCCggGCCCCCCgcgGCCgaGAcuaGCGa-- -3'
miRNA:   3'- cCGGGa-CGGGGGG---UGGgaCU---UGCauu -5'
5565 5' -60.8 NC_001806.1 + 55032 0.66 0.660521
Target:  5'- cGGCCgUGCaCgUCGCCUUGAACGg-- -3'
miRNA:   3'- -CCGGgACGgGgGGUGGGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 20586 0.66 0.660521
Target:  5'- cGCCCUcGCgCCCCGCCCaUGGcagauggcGCGg-- -3'
miRNA:   3'- cCGGGA-CGgGGGGUGGG-ACU--------UGCauu -5'
5565 5' -60.8 NC_001806.1 + 108176 0.66 0.660521
Target:  5'- cGCCCggguuucugGCCgCCUCugCgCUGGGCGUGGu -3'
miRNA:   3'- cCGGGa--------CGG-GGGGugG-GACUUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 92106 0.66 0.659523
Target:  5'- gGGCCgUGCCCCCUGCUucagcuuCUcGGGCGg-- -3'
miRNA:   3'- -CCGGgACGGGGGGUGG-------GA-CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 139246 0.66 0.657528
Target:  5'- uGGCCgaguuacuggaagagGCCCCCCugCCUu-ACGUGGu -3'
miRNA:   3'- -CCGGga-------------CGGGGGGugGGAcuUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 113713 0.66 0.654534
Target:  5'- aGGCCCUGgCCCagcugguugaugacuUUACCCUGAcCGg-- -3'
miRNA:   3'- -CCGGGACgGGG---------------GGUGGGACUuGCauu -5'
5565 5' -60.8 NC_001806.1 + 112041 0.66 0.65054
Target:  5'- cGCCCUGCUCacgggggagGCCCUGGACGg-- -3'
miRNA:   3'- cCGGGACGGGggg------UGGGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 53341 0.67 0.640544
Target:  5'- cGGCCCga-CCaacgucgCCGCCCUGAGCGc-- -3'
miRNA:   3'- -CCGGGacgGGg------GGUGGGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 114537 0.67 0.640544
Target:  5'- cGCCCaauuuCCCCCCgGCCCUGcGCGa-- -3'
miRNA:   3'- cCGGGac---GGGGGG-UGGGACuUGCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.