Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5566 | 5' | -50.6 | NC_001806.1 | + | 4018 | 0.66 | 0.995022 |
Target: 5'- aGCCGCGUgaucaGGgcGUAcugcUGCGCGGCG-UCg -3' miRNA: 3'- -UGGCGCA-----CCaaUAU----AUGUGCUGCcAG- -5' |
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5566 | 5' | -50.6 | NC_001806.1 | + | 99731 | 0.66 | 0.995736 |
Target: 5'- cGCUGUGUGGUggggggcgAUACACGGCcuccGGg- -3' miRNA: 3'- -UGGCGCACCAaua-----UAUGUGCUG----CCag -5' |
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5566 | 5' | -50.6 | NC_001806.1 | + | 116076 | 0.66 | 0.995736 |
Target: 5'- uGCCGCGUGG--AUcgGCGCcaugcuGGCGGa- -3' miRNA: 3'- -UGGCGCACCaaUAuaUGUG------CUGCCag -5' |
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5566 | 5' | -50.6 | NC_001806.1 | + | 61511 | 0.66 | 0.995997 |
Target: 5'- gACCGCcUGGcggaacagcccGUACACG-CGGUCg -3' miRNA: 3'- -UGGCGcACCaaua-------UAUGUGCuGCCAG- -5' |
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5566 | 5' | -50.6 | NC_001806.1 | + | 144800 | 0.66 | 0.99606 |
Target: 5'- gGCCGCGUacggcccgggacgagGGgcccccgacCGCGGCGGUCc -3' miRNA: 3'- -UGGCGCA---------------CCaauauau--GUGCUGCCAG- -5' |
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5566 | 5' | -50.6 | NC_001806.1 | + | 148176 | 0.66 | 0.996364 |
Target: 5'- uCUGCGUGGggGg--GCGCGGgGcGUCc -3' miRNA: 3'- uGGCGCACCaaUauaUGUGCUgC-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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