miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 3' -60.9 NC_001806.1 + 2814 0.66 0.727808
Target:  5'- gCGGGGgcgggcucgGGCCCCGggggcguggaggggGGCGCGGG-CGCGg -3'
miRNA:   3'- -GCUCC---------UCGGGGCa-------------CUGCGUCUgGCGU- -5'
5567 3' -60.9 NC_001806.1 + 130196 0.66 0.724
Target:  5'- -aAGGGGCgCUGUGACGCGucGGCaUGCGa -3'
miRNA:   3'- gcUCCUCGgGGCACUGCGU--CUG-GCGU- -5'
5567 3' -60.9 NC_001806.1 + 143619 0.66 0.721136
Target:  5'- cCGGGGGccguuaucuccagcGCCCCGUccGGCGC--GCCGCc -3'
miRNA:   3'- -GCUCCU--------------CGGGGCA--CUGCGucUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 30290 0.66 0.71539
Target:  5'- cCGGGGcggagccggccgcccGCCCCGcgGACGCGcGCCGUg -3'
miRNA:   3'- -GCUCCu--------------CGGGGCa-CUGCGUcUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 22129 0.66 0.71443
Target:  5'- uGGGGGGCgCCCGaGGCGgAGGaggCGCGa -3'
miRNA:   3'- gCUCCUCG-GGGCaCUGCgUCUg--GCGU- -5'
5567 3' -60.9 NC_001806.1 + 37350 0.66 0.71443
Target:  5'- cCGAuaauGGGGUCCUGggGGCGCAG-CgGCAg -3'
miRNA:   3'- -GCU----CCUCGGGGCa-CUGCGUCuGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 76028 0.66 0.71443
Target:  5'- uCGGGuggacaccGAGCCCC-UGGCGCGGcuuCUGCGg -3'
miRNA:   3'- -GCUC--------CUCGGGGcACUGCGUCu--GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 63453 0.66 0.71443
Target:  5'- aCGaAGGGGCuCCCG-GuCGU-GGCCGCAc -3'
miRNA:   3'- -GC-UCCUCG-GGGCaCuGCGuCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 73211 0.66 0.71443
Target:  5'- ---cGAGcCCCCG-GGCGCAGACCu-- -3'
miRNA:   3'- gcucCUC-GGGGCaCUGCGUCUGGcgu -5'
5567 3' -60.9 NC_001806.1 + 21532 0.66 0.698985
Target:  5'- aCGGGaGGCCCCGcuacgcGGCGCguauccggaccccacGGACCGCc -3'
miRNA:   3'- -GCUCcUCGGGGCa-----CUGCG---------------UCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 6622 0.66 0.695101
Target:  5'- uCGAGGcgaccggcGGCgaCCGUuGCGUGGACCGCu -3'
miRNA:   3'- -GCUCC--------UCGg-GGCAcUGCGUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 147492 0.66 0.695101
Target:  5'- gCGGGGcGGCgCCGgagGGgGCGGcGCCGCGg -3'
miRNA:   3'- -GCUCC-UCGgGGCa--CUgCGUC-UGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 71340 0.66 0.695101
Target:  5'- gGAGGccuaugggcacGGCCCaCGccAgGCGGACCGCGa -3'
miRNA:   3'- gCUCC-----------UCGGG-GCacUgCGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 97597 0.66 0.684383
Target:  5'- gGGGGAcuGCaucggcaaggacgCCCGcGACGCcauGGACCGCAu -3'
miRNA:   3'- gCUCCU--CG-------------GGGCaCUGCG---UCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 71015 0.66 0.682429
Target:  5'- cCGAGGAcgcccccccgcaaaGCCCCGcGGC-C-GACCGCGu -3'
miRNA:   3'- -GCUCCU--------------CGGGGCaCUGcGuCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 144818 0.66 0.675577
Target:  5'- aCGAGGGGCCCCc-GACcgcgGCGGuCCGg- -3'
miRNA:   3'- -GCUCCUCGGGGcaCUG----CGUCuGGCgu -5'
5567 3' -60.9 NC_001806.1 + 46061 0.66 0.675577
Target:  5'- gGAGGucCCCCG-GACGCGGcgucCCGUu -3'
miRNA:   3'- gCUCCucGGGGCaCUGCGUCu---GGCGu -5'
5567 3' -60.9 NC_001806.1 + 142207 0.67 0.665761
Target:  5'- uGAGGGGCUUCG-GcUGCAGGcCCGCu -3'
miRNA:   3'- gCUCCUCGGGGCaCuGCGUCU-GGCGu -5'
5567 3' -60.9 NC_001806.1 + 90536 0.67 0.659859
Target:  5'- aCGGGGGaggcgcugugugagcGCCUCGgccugGACcCGGACCGCGc -3'
miRNA:   3'- -GCUCCU---------------CGGGGCa----CUGcGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 7435 0.67 0.655921
Target:  5'- -cGGGAGCCCCGgaccccACGCAccccCCGCGa -3'
miRNA:   3'- gcUCCUCGGGGCac----UGCGUcu--GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.