Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5567 | 3' | -60.9 | NC_001806.1 | + | 2814 | 0.66 | 0.727808 |
Target: 5'- gCGGGGgcgggcucgGGCCCCGggggcguggaggggGGCGCGGG-CGCGg -3' miRNA: 3'- -GCUCC---------UCGGGGCa-------------CUGCGUCUgGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 130196 | 0.66 | 0.724 |
Target: 5'- -aAGGGGCgCUGUGACGCGucGGCaUGCGa -3' miRNA: 3'- gcUCCUCGgGGCACUGCGU--CUG-GCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 143619 | 0.66 | 0.721136 |
Target: 5'- cCGGGGGccguuaucuccagcGCCCCGUccGGCGC--GCCGCc -3' miRNA: 3'- -GCUCCU--------------CGGGGCA--CUGCGucUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 30290 | 0.66 | 0.71539 |
Target: 5'- cCGGGGcggagccggccgcccGCCCCGcgGACGCGcGCCGUg -3' miRNA: 3'- -GCUCCu--------------CGGGGCa-CUGCGUcUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 63453 | 0.66 | 0.71443 |
Target: 5'- aCGaAGGGGCuCCCG-GuCGU-GGCCGCAc -3' miRNA: 3'- -GC-UCCUCG-GGGCaCuGCGuCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 73211 | 0.66 | 0.71443 |
Target: 5'- ---cGAGcCCCCG-GGCGCAGACCu-- -3' miRNA: 3'- gcucCUC-GGGGCaCUGCGUCUGGcgu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 76028 | 0.66 | 0.71443 |
Target: 5'- uCGGGuggacaccGAGCCCC-UGGCGCGGcuuCUGCGg -3' miRNA: 3'- -GCUC--------CUCGGGGcACUGCGUCu--GGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 37350 | 0.66 | 0.71443 |
Target: 5'- cCGAuaauGGGGUCCUGggGGCGCAG-CgGCAg -3' miRNA: 3'- -GCU----CCUCGGGGCa-CUGCGUCuGgCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 22129 | 0.66 | 0.71443 |
Target: 5'- uGGGGGGCgCCCGaGGCGgAGGaggCGCGa -3' miRNA: 3'- gCUCCUCG-GGGCaCUGCgUCUg--GCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 21532 | 0.66 | 0.698985 |
Target: 5'- aCGGGaGGCCCCGcuacgcGGCGCguauccggaccccacGGACCGCc -3' miRNA: 3'- -GCUCcUCGGGGCa-----CUGCG---------------UCUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 147492 | 0.66 | 0.695101 |
Target: 5'- gCGGGGcGGCgCCGgagGGgGCGGcGCCGCGg -3' miRNA: 3'- -GCUCC-UCGgGGCa--CUgCGUC-UGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 6622 | 0.66 | 0.695101 |
Target: 5'- uCGAGGcgaccggcGGCgaCCGUuGCGUGGACCGCu -3' miRNA: 3'- -GCUCC--------UCGg-GGCAcUGCGUCUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 71340 | 0.66 | 0.695101 |
Target: 5'- gGAGGccuaugggcacGGCCCaCGccAgGCGGACCGCGa -3' miRNA: 3'- gCUCC-----------UCGGG-GCacUgCGUCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 97597 | 0.66 | 0.684383 |
Target: 5'- gGGGGAcuGCaucggcaaggacgCCCGcGACGCcauGGACCGCAu -3' miRNA: 3'- gCUCCU--CG-------------GGGCaCUGCG---UCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 71015 | 0.66 | 0.682429 |
Target: 5'- cCGAGGAcgcccccccgcaaaGCCCCGcGGC-C-GACCGCGu -3' miRNA: 3'- -GCUCCU--------------CGGGGCaCUGcGuCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 144818 | 0.66 | 0.675577 |
Target: 5'- aCGAGGGGCCCCc-GACcgcgGCGGuCCGg- -3' miRNA: 3'- -GCUCCUCGGGGcaCUG----CGUCuGGCgu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 46061 | 0.66 | 0.675577 |
Target: 5'- gGAGGucCCCCG-GACGCGGcgucCCGUu -3' miRNA: 3'- gCUCCucGGGGCaCUGCGUCu---GGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 142207 | 0.67 | 0.665761 |
Target: 5'- uGAGGGGCUUCG-GcUGCAGGcCCGCu -3' miRNA: 3'- gCUCCUCGGGGCaCuGCGUCU-GGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 90536 | 0.67 | 0.659859 |
Target: 5'- aCGGGGGaggcgcugugugagcGCCUCGgccugGACcCGGACCGCGc -3' miRNA: 3'- -GCUCCU---------------CGGGGCa----CUGcGUCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 4424 | 0.67 | 0.655921 |
Target: 5'- gGGGGGGUggCCCG-GGCGgGGGCgGCGu -3' miRNA: 3'- gCUCCUCG--GGGCaCUGCgUCUGgCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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