miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5568 5' -49.6 NC_001806.1 + 125832 0.66 0.997197
Target:  5'- --gGCGCCuGACGCGCc----GCGGGc -3'
miRNA:   3'- uuaUGUGGuCUGUGCGuuucaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 69573 0.66 0.996676
Target:  5'- --gGCGCCAGcgagcACACGCAcGG-GCGGc -3'
miRNA:   3'- uuaUGUGGUC-----UGUGCGUuUCaCGUCc -5'
5568 5' -49.6 NC_001806.1 + 76845 0.66 0.996676
Target:  5'- -cUACGCgacaGGGCGCGCGcc-UGCAGGc -3'
miRNA:   3'- uuAUGUGg---UCUGUGCGUuucACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 102678 0.66 0.996077
Target:  5'- cAUACAgCCGGccGCACGCc---UGCAGGg -3'
miRNA:   3'- uUAUGU-GGUC--UGUGCGuuucACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 71360 0.66 0.996077
Target:  5'- --cACGCCAGGCGgacCGCGAGGggGCGc- -3'
miRNA:   3'- uuaUGUGGUCUGU---GCGUUUCa-CGUcc -5'
5568 5' -49.6 NC_001806.1 + 63123 0.66 0.996077
Target:  5'- --aGCuuCAGGCAgGCcguGUGCAGGc -3'
miRNA:   3'- uuaUGugGUCUGUgCGuuuCACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 51753 0.66 0.996077
Target:  5'- --gGCGCCAaagcugcuGGCGCGCAccccguucAAGaGCGGGg -3'
miRNA:   3'- uuaUGUGGU--------CUGUGCGU--------UUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 95309 0.66 0.996077
Target:  5'- --cGCGgCGGACGCGCccAAGGgcggcGCGGGc -3'
miRNA:   3'- uuaUGUgGUCUGUGCG--UUUCa----CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 100386 0.66 0.996077
Target:  5'- ---uCGCCGGGCgGCGCGGGG-GcCGGGg -3'
miRNA:   3'- uuauGUGGUCUG-UGCGUUUCaC-GUCC- -5'
5568 5' -49.6 NC_001806.1 + 73900 0.66 0.995882
Target:  5'- gGAU-CGCCAGAUGCGCGAGGcccUcgacgcccucgcucGCGGGg -3'
miRNA:   3'- -UUAuGUGGUCUGUGCGUUUC---A--------------CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 6179 0.66 0.995393
Target:  5'- --gGCugCGGAgCACGCGgaccGGGaGCGGGa -3'
miRNA:   3'- uuaUGugGUCU-GUGCGU----UUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 24860 0.66 0.995393
Target:  5'- --gGCACCGuGCugGCGgcG-GCGGGg -3'
miRNA:   3'- uuaUGUGGUcUGugCGUuuCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 2630 0.66 0.994615
Target:  5'- ----gGCCAcGGCGCGCGGGGaGCAGu -3'
miRNA:   3'- uuaugUGGU-CUGUGCGUUUCaCGUCc -5'
5568 5' -49.6 NC_001806.1 + 116983 0.66 0.994615
Target:  5'- uGUGCACCuuuGACgGCGCGGccguuGUGCGGu -3'
miRNA:   3'- uUAUGUGGu--CUG-UGCGUUu----CACGUCc -5'
5568 5' -49.6 NC_001806.1 + 148601 0.66 0.994615
Target:  5'- aGGUACACCAGcUugGCGuuGcacagcggGCAGGu -3'
miRNA:   3'- -UUAUGUGGUCuGugCGUuuCa-------CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 151069 0.66 0.994615
Target:  5'- --cGCGCgGGGguCGCGGGGgucGCGGGg -3'
miRNA:   3'- uuaUGUGgUCUguGCGUUUCa--CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 100736 0.66 0.994615
Target:  5'- --cACGCCGGGCGC-CcAGGUGCGcccGGa -3'
miRNA:   3'- uuaUGUGGUCUGUGcGuUUCACGU---CC- -5'
5568 5' -49.6 NC_001806.1 + 138403 0.66 0.994532
Target:  5'- --gACGCgGGGCACaugcgcuGCGAGGUGCAc- -3'
miRNA:   3'- uuaUGUGgUCUGUG-------CGUUUCACGUcc -5'
5568 5' -49.6 NC_001806.1 + 57507 0.67 0.9941
Target:  5'- --gGCGCCAGgcacacacaugaaccACACGCGAcacGCGGGa -3'
miRNA:   3'- uuaUGUGGUC---------------UGUGCGUUucaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 127184 0.67 0.993735
Target:  5'- cGUGCccCCGGAUauGCGCGGGGUuacGCGGGc -3'
miRNA:   3'- uUAUGu-GGUCUG--UGCGUUUCA---CGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.