miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5568 5' -49.6 NC_001806.1 + 151069 0.66 0.994615
Target:  5'- --cGCGCgGGGguCGCGGGGgucGCGGGg -3'
miRNA:   3'- uuaUGUGgUCUguGCGUUUCa--CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 148601 0.66 0.994615
Target:  5'- aGGUACACCAGcUugGCGuuGcacagcggGCAGGu -3'
miRNA:   3'- -UUAUGUGGUCuGugCGUuuCa-------CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 140131 0.67 0.990381
Target:  5'- --gACGCCAGGCGCgGCAcacGGG-GUGGGc -3'
miRNA:   3'- uuaUGUGGUCUGUG-CGU---UUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 138403 0.66 0.994532
Target:  5'- --gACGCgGGGCACaugcgcuGCGAGGUGCAc- -3'
miRNA:   3'- uuaUGUGgUCUGUG-------CGUUUCACGUcc -5'
5568 5' -49.6 NC_001806.1 + 134494 0.67 0.990381
Target:  5'- --cACGCCAGAaccUugGCAAAGgucGaCGGGg -3'
miRNA:   3'- uuaUGUGGUCU---GugCGUUUCa--C-GUCC- -5'
5568 5' -49.6 NC_001806.1 + 132969 0.68 0.983889
Target:  5'- --aAgACUGGACGCGCu-GGUGguGGc -3'
miRNA:   3'- uuaUgUGGUCUGUGCGuuUCACguCC- -5'
5568 5' -49.6 NC_001806.1 + 128395 1.1 0.009561
Target:  5'- aAAUACACCAGACACGCAAAGUGCAGGa -3'
miRNA:   3'- -UUAUGUGGUCUGUGCGUUUCACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 127184 0.67 0.993735
Target:  5'- cGUGCccCCGGAUauGCGCGGGGUuacGCGGGc -3'
miRNA:   3'- uUAUGu-GGUCUG--UGCGUUUCA---CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 125832 0.66 0.997197
Target:  5'- --gGCGCCuGACGCGCc----GCGGGc -3'
miRNA:   3'- uuaUGUGGuCUGUGCGuuucaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 122645 0.73 0.852641
Target:  5'- aAGUGCACCAG-CugGCGAaaggcuucggagcGGUGgAGGg -3'
miRNA:   3'- -UUAUGUGGUCuGugCGUU-------------UCACgUCC- -5'
5568 5' -49.6 NC_001806.1 + 116983 0.66 0.994615
Target:  5'- uGUGCACCuuuGACgGCGCGGccguuGUGCGGu -3'
miRNA:   3'- uUAUGUGGu--CUG-UGCGUUu----CACGUCc -5'
5568 5' -49.6 NC_001806.1 + 116162 0.67 0.991627
Target:  5'- --cGCugCAG-CGCuGCGAAGgGCGGGu -3'
miRNA:   3'- uuaUGugGUCuGUG-CGUUUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 109684 0.67 0.990249
Target:  5'- --cACAcCCGGGCugGUucgcagcGAGGUGCAGu -3'
miRNA:   3'- uuaUGU-GGUCUGugCG-------UUUCACGUCc -5'
5568 5' -49.6 NC_001806.1 + 108698 0.68 0.985758
Target:  5'- --cGCACCaAGGUACGCGAcGUGCucGGGg -3'
miRNA:   3'- uuaUGUGG-UCUGUGCGUUuCACG--UCC- -5'
5568 5' -49.6 NC_001806.1 + 104004 0.74 0.827648
Target:  5'- --cAC-CCGGAgGCGCGAGGgacUGCAGGa -3'
miRNA:   3'- uuaUGuGGUCUgUGCGUUUC---ACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 102678 0.66 0.996077
Target:  5'- cAUACAgCCGGccGCACGCc---UGCAGGg -3'
miRNA:   3'- uUAUGU-GGUC--UGUGCGuuucACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 102520 0.78 0.63399
Target:  5'- --cGCgGCCAGGCACGCcAGGUaGCGGGg -3'
miRNA:   3'- uuaUG-UGGUCUGUGCGuUUCA-CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 100736 0.66 0.994615
Target:  5'- --cACGCCGGGCGC-CcAGGUGCGcccGGa -3'
miRNA:   3'- uuaUGUGGUCUGUGcGuUUCACGU---CC- -5'
5568 5' -49.6 NC_001806.1 + 100386 0.66 0.996077
Target:  5'- ---uCGCCGGGCgGCGCGGGG-GcCGGGg -3'
miRNA:   3'- uuauGUGGUCUG-UGCGUUUCaC-GUCC- -5'
5568 5' -49.6 NC_001806.1 + 96371 0.67 0.992636
Target:  5'- cAUGCGCCAGGgcgccccCGCGCGGGGgcgccGguGGu -3'
miRNA:   3'- uUAUGUGGUCU-------GUGCGUUUCa----CguCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.