miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5568 5' -49.6 NC_001806.1 + 95309 0.66 0.996077
Target:  5'- --cGCGgCGGACGCGCccAAGGgcggcGCGGGc -3'
miRNA:   3'- uuaUGUgGUCUGUGCG--UUUCa----CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 92084 0.67 0.993735
Target:  5'- --gACGCUGGACcCGUAcgcGUGCGGGc -3'
miRNA:   3'- uuaUGUGGUCUGuGCGUuu-CACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 87489 0.7 0.949534
Target:  5'- --cGCAgCAGGCACGUAAAGacGCGGa -3'
miRNA:   3'- uuaUGUgGUCUGUGCGUUUCa-CGUCc -5'
5568 5' -49.6 NC_001806.1 + 76845 0.66 0.996676
Target:  5'- -cUACGCgacaGGGCGCGCGcc-UGCAGGc -3'
miRNA:   3'- uuAUGUGg---UCUGUGCGUuucACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 76723 0.72 0.911999
Target:  5'- uGGUGgACCAGACggagaaggcGCGCGAGcucgacGUGCAGGc -3'
miRNA:   3'- -UUAUgUGGUCUG---------UGCGUUU------CACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 76674 0.68 0.987456
Target:  5'- -cUGgACCAGGCGCGCucGGcGgAGGa -3'
miRNA:   3'- uuAUgUGGUCUGUGCGuuUCaCgUCC- -5'
5568 5' -49.6 NC_001806.1 + 73900 0.66 0.995882
Target:  5'- gGAU-CGCCAGAUGCGCGAGGcccUcgacgcccucgcucGCGGGg -3'
miRNA:   3'- -UUAuGUGGUCUGUGCGUUUC---A--------------CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 72895 0.69 0.977162
Target:  5'- --gGCACCGGGCACGCuacucgGCcGGc -3'
miRNA:   3'- uuaUGUGGUCUGUGCGuuuca-CGuCC- -5'
5568 5' -49.6 NC_001806.1 + 71360 0.66 0.996077
Target:  5'- --cACGCCAGGCGgacCGCGAGGggGCGc- -3'
miRNA:   3'- uuaUGUGGUCUGU---GCGUUUCa-CGUcc -5'
5568 5' -49.6 NC_001806.1 + 69573 0.66 0.996676
Target:  5'- --gGCGCCAGcgagcACACGCAcGG-GCGGc -3'
miRNA:   3'- uuaUGUGGUC-----UGUGCGUuUCaCGUCc -5'
5568 5' -49.6 NC_001806.1 + 63123 0.66 0.996077
Target:  5'- --aGCuuCAGGCAgGCcguGUGCAGGc -3'
miRNA:   3'- uuaUGugGUCUGUgCGuuuCACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 59361 0.75 0.790481
Target:  5'- --cGCACCGGcGCAUGCAGGGUGCu-- -3'
miRNA:   3'- uuaUGUGGUC-UGUGCGUUUCACGucc -5'
5568 5' -49.6 NC_001806.1 + 57507 0.67 0.9941
Target:  5'- --gGCGCCAGgcacacacaugaaccACACGCGAcacGCGGGa -3'
miRNA:   3'- uuaUGUGGUC---------------UGUGCGUUucaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 57306 0.75 0.780765
Target:  5'- --cGCGCCAGggcccccacGCACGCGAGGUGUGGc -3'
miRNA:   3'- uuaUGUGGUC---------UGUGCGUUUCACGUCc -5'
5568 5' -49.6 NC_001806.1 + 51753 0.66 0.996077
Target:  5'- --gGCGCCAaagcugcuGGCGCGCAccccguucAAGaGCGGGg -3'
miRNA:   3'- uuaUGUGGU--------CUGUGCGU--------UUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 51263 0.71 0.935045
Target:  5'- --aGCGCCGGACGCGCGgcgcGAGcucccUGCGGc -3'
miRNA:   3'- uuaUGUGGUCUGUGCGU----UUC-----ACGUCc -5'
5568 5' -49.6 NC_001806.1 + 50003 0.69 0.968568
Target:  5'- --cGCGCCuu-CACGCGGAGgcgcGCGGGu -3'
miRNA:   3'- uuaUGUGGucuGUGCGUUUCa---CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 42630 0.71 0.935045
Target:  5'- -cUGCGCCGcggcGGCGuCGCGuccGGUGCGGGg -3'
miRNA:   3'- uuAUGUGGU----CUGU-GCGUu--UCACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 26813 0.69 0.96525
Target:  5'- -cUGCGCCugcGACGCGCGg---GCGGGg -3'
miRNA:   3'- uuAUGUGGu--CUGUGCGUuucaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 25516 0.68 0.981839
Target:  5'- --aGCGCgGGACGCGCcGGGgaggGCuGGg -3'
miRNA:   3'- uuaUGUGgUCUGUGCGuUUCa---CGuCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.