Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5568 | 5' | -49.6 | NC_001806.1 | + | 72895 | 0.69 | 0.977162 |
Target: 5'- --gGCACCGGGCACGCuacucgGCcGGc -3' miRNA: 3'- uuaUGUGGUCUGUGCGuuuca-CGuCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 73900 | 0.66 | 0.995882 |
Target: 5'- gGAU-CGCCAGAUGCGCGAGGcccUcgacgcccucgcucGCGGGg -3' miRNA: 3'- -UUAuGUGGUCUGUGCGUUUC---A--------------CGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 76674 | 0.68 | 0.987456 |
Target: 5'- -cUGgACCAGGCGCGCucGGcGgAGGa -3' miRNA: 3'- uuAUgUGGUCUGUGCGuuUCaCgUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 76723 | 0.72 | 0.911999 |
Target: 5'- uGGUGgACCAGACggagaaggcGCGCGAGcucgacGUGCAGGc -3' miRNA: 3'- -UUAUgUGGUCUG---------UGCGUUU------CACGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 76845 | 0.66 | 0.996676 |
Target: 5'- -cUACGCgacaGGGCGCGCGcc-UGCAGGc -3' miRNA: 3'- uuAUGUGg---UCUGUGCGUuucACGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 87489 | 0.7 | 0.949534 |
Target: 5'- --cGCAgCAGGCACGUAAAGacGCGGa -3' miRNA: 3'- uuaUGUgGUCUGUGCGUUUCa-CGUCc -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 92084 | 0.67 | 0.993735 |
Target: 5'- --gACGCUGGACcCGUAcgcGUGCGGGc -3' miRNA: 3'- uuaUGUGGUCUGuGCGUuu-CACGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 95309 | 0.66 | 0.996077 |
Target: 5'- --cGCGgCGGACGCGCccAAGGgcggcGCGGGc -3' miRNA: 3'- uuaUGUgGUCUGUGCG--UUUCa----CGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 96371 | 0.67 | 0.992636 |
Target: 5'- cAUGCGCCAGGgcgccccCGCGCGGGGgcgccGguGGu -3' miRNA: 3'- uUAUGUGGUCU-------GUGCGUUUCa----CguCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 100386 | 0.66 | 0.996077 |
Target: 5'- ---uCGCCGGGCgGCGCGGGG-GcCGGGg -3' miRNA: 3'- uuauGUGGUCUG-UGCGUUUCaC-GUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 100736 | 0.66 | 0.994615 |
Target: 5'- --cACGCCGGGCGC-CcAGGUGCGcccGGa -3' miRNA: 3'- uuaUGUGGUCUGUGcGuUUCACGU---CC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 102520 | 0.78 | 0.63399 |
Target: 5'- --cGCgGCCAGGCACGCcAGGUaGCGGGg -3' miRNA: 3'- uuaUG-UGGUCUGUGCGuUUCA-CGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 102678 | 0.66 | 0.996077 |
Target: 5'- cAUACAgCCGGccGCACGCc---UGCAGGg -3' miRNA: 3'- uUAUGU-GGUC--UGUGCGuuucACGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 104004 | 0.74 | 0.827648 |
Target: 5'- --cAC-CCGGAgGCGCGAGGgacUGCAGGa -3' miRNA: 3'- uuaUGuGGUCUgUGCGUUUC---ACGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 108698 | 0.68 | 0.985758 |
Target: 5'- --cGCACCaAGGUACGCGAcGUGCucGGGg -3' miRNA: 3'- uuaUGUGG-UCUGUGCGUUuCACG--UCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 109684 | 0.67 | 0.990249 |
Target: 5'- --cACAcCCGGGCugGUucgcagcGAGGUGCAGu -3' miRNA: 3'- uuaUGU-GGUCUGugCG-------UUUCACGUCc -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 116162 | 0.67 | 0.991627 |
Target: 5'- --cGCugCAG-CGCuGCGAAGgGCGGGu -3' miRNA: 3'- uuaUGugGUCuGUG-CGUUUCaCGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 116983 | 0.66 | 0.994615 |
Target: 5'- uGUGCACCuuuGACgGCGCGGccguuGUGCGGu -3' miRNA: 3'- uUAUGUGGu--CUG-UGCGUUu----CACGUCc -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 122645 | 0.73 | 0.852641 |
Target: 5'- aAGUGCACCAG-CugGCGAaaggcuucggagcGGUGgAGGg -3' miRNA: 3'- -UUAUGUGGUCuGugCGUU-------------UCACgUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 125832 | 0.66 | 0.997197 |
Target: 5'- --gGCGCCuGACGCGCc----GCGGGc -3' miRNA: 3'- uuaUGUGGuCUGUGCGuuucaCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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