Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5568 | 5' | -49.6 | NC_001806.1 | + | 20897 | 0.67 | 0.990381 |
Target: 5'- --gACGCC-GAUACGCGgacgAAGcGCGGGa -3' miRNA: 3'- uuaUGUGGuCUGUGCGU----UUCaCGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 5648 | 0.67 | 0.990381 |
Target: 5'- --cGCGCCAucugccaugggcGGgGCGCGAGG-GCGGGu -3' miRNA: 3'- uuaUGUGGU------------CUgUGCGUUUCaCGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 134494 | 0.67 | 0.990381 |
Target: 5'- --cACGCCAGAaccUugGCAAAGgucGaCGGGg -3' miRNA: 3'- uuaUGUGGUCU---GugCGUUUCa--C-GUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 16249 | 0.67 | 0.990381 |
Target: 5'- --aGgACCAGACACGUgaccccGGAGacgacaUGCAGGu -3' miRNA: 3'- uuaUgUGGUCUGUGCG------UUUC------ACGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 140131 | 0.67 | 0.990381 |
Target: 5'- --gACGCCAGGCGCgGCAcacGGG-GUGGGc -3' miRNA: 3'- uuaUGUGGUCUGUG-CGU---UUCaCGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 116162 | 0.67 | 0.991627 |
Target: 5'- --cGCugCAG-CGCuGCGAAGgGCGGGu -3' miRNA: 3'- uuaUGugGUCuGUG-CGUUUCaCGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 96371 | 0.67 | 0.992636 |
Target: 5'- cAUGCGCCAGGgcgccccCGCGCGGGGgcgccGguGGu -3' miRNA: 3'- uUAUGUGGUCU-------GUGCGUUUCa----CguCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 127184 | 0.67 | 0.993735 |
Target: 5'- cGUGCccCCGGAUauGCGCGGGGUuacGCGGGc -3' miRNA: 3'- uUAUGu-GGUCUG--UGCGUUUCA---CGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 92084 | 0.67 | 0.993735 |
Target: 5'- --gACGCUGGACcCGUAcgcGUGCGGGc -3' miRNA: 3'- uuaUGUGGUCUGuGCGUuu-CACGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 57507 | 0.67 | 0.9941 |
Target: 5'- --gGCGCCAGgcacacacaugaaccACACGCGAcacGCGGGa -3' miRNA: 3'- uuaUGUGGUC---------------UGUGCGUUucaCGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 138403 | 0.66 | 0.994532 |
Target: 5'- --gACGCgGGGCACaugcgcuGCGAGGUGCAc- -3' miRNA: 3'- uuaUGUGgUCUGUG-------CGUUUCACGUcc -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 100736 | 0.66 | 0.994615 |
Target: 5'- --cACGCCGGGCGC-CcAGGUGCGcccGGa -3' miRNA: 3'- uuaUGUGGUCUGUGcGuUUCACGU---CC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 151069 | 0.66 | 0.994615 |
Target: 5'- --cGCGCgGGGguCGCGGGGgucGCGGGg -3' miRNA: 3'- uuaUGUGgUCUguGCGUUUCa--CGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 148601 | 0.66 | 0.994615 |
Target: 5'- aGGUACACCAGcUugGCGuuGcacagcggGCAGGu -3' miRNA: 3'- -UUAUGUGGUCuGugCGUuuCa-------CGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 116983 | 0.66 | 0.994615 |
Target: 5'- uGUGCACCuuuGACgGCGCGGccguuGUGCGGu -3' miRNA: 3'- uUAUGUGGu--CUG-UGCGUUu----CACGUCc -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 2630 | 0.66 | 0.994615 |
Target: 5'- ----gGCCAcGGCGCGCGGGGaGCAGu -3' miRNA: 3'- uuaugUGGU-CUGUGCGUUUCaCGUCc -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 6179 | 0.66 | 0.995393 |
Target: 5'- --gGCugCGGAgCACGCGgaccGGGaGCGGGa -3' miRNA: 3'- uuaUGugGUCU-GUGCGU----UUCaCGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 24860 | 0.66 | 0.995393 |
Target: 5'- --gGCACCGuGCugGCGgcG-GCGGGg -3' miRNA: 3'- uuaUGUGGUcUGugCGUuuCaCGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 73900 | 0.66 | 0.995882 |
Target: 5'- gGAU-CGCCAGAUGCGCGAGGcccUcgacgcccucgcucGCGGGg -3' miRNA: 3'- -UUAuGUGGUCUGUGCGUUUC---A--------------CGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 63123 | 0.66 | 0.996077 |
Target: 5'- --aGCuuCAGGCAgGCcguGUGCAGGc -3' miRNA: 3'- uuaUGugGUCUGUgCGuuuCACGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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