Results 1 - 20 of 210 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 62951 | 0.66 | 0.828888 |
Target: 5'- aAAGcGCUc-CCAGUGaAAGCGGCCGgCg -3' miRNA: 3'- aUUC-CGGuaGGUCGC-UUCGUCGGCgG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 127897 | 0.66 | 0.828888 |
Target: 5'- -uAGGCgCggGUgCAGCGGAGCacGGCCauGCCg -3' miRNA: 3'- auUCCG-G--UAgGUCGCUUCG--UCGG--CGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 57655 | 0.66 | 0.828888 |
Target: 5'- gGGGGCCccCCcggaaGGCGGAGaAGgCGCCg -3' miRNA: 3'- aUUCCGGuaGG-----UCGCUUCgUCgGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 30014 | 0.66 | 0.828888 |
Target: 5'- uUGGGGUUGUUgaagcggaGGCGggGCGGCCgagggGCCg -3' miRNA: 3'- -AUUCCGGUAGg-------UCGCuuCGUCGG-----CGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 69221 | 0.66 | 0.826346 |
Target: 5'- ---uGCCGucUCCAGCcugcugcagcucggGGAGCAGCCcuccGCCg -3' miRNA: 3'- auucCGGU--AGGUCG--------------CUUCGUCGG----CGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 107379 | 0.66 | 0.820351 |
Target: 5'- --cGGCgGUgCAGCGGGaacGCGcCCGCCg -3' miRNA: 3'- auuCCGgUAgGUCGCUU---CGUcGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 34762 | 0.66 | 0.820351 |
Target: 5'- gGGGGCaaagCCGGCGggGCGGuUCGg- -3' miRNA: 3'- aUUCCGgua-GGUCGCuuCGUC-GGCgg -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 52558 | 0.66 | 0.820351 |
Target: 5'- cGGGGCCucccCCGGaCGAcauGGcCAGCgGCCc -3' miRNA: 3'- aUUCCGGua--GGUC-GCU---UC-GUCGgCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 134227 | 0.66 | 0.820351 |
Target: 5'- -uAGGCCAcgcagUCgGaGCGggGgGGCgGCCc -3' miRNA: 3'- auUCCGGU-----AGgU-CGCuuCgUCGgCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 143371 | 0.66 | 0.820351 |
Target: 5'- gGGGGCCGgcagaccgaCGGCGAcaacgcuccccGGCGGCCGg- -3' miRNA: 3'- aUUCCGGUag-------GUCGCU-----------UCGUCGGCgg -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 72675 | 0.66 | 0.819488 |
Target: 5'- aGAGGCCAagcgcccgaaUCgGGCGcccgacgauguauGGGCGGUgGCCc -3' miRNA: 3'- aUUCCGGU----------AGgUCGC-------------UUCGUCGgCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 18368 | 0.66 | 0.815146 |
Target: 5'- aUAGGGgCAggCGGUGGagaagcgcauuuuccGGCAGCCGUCc -3' miRNA: 3'- -AUUCCgGUagGUCGCU---------------UCGUCGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 1959 | 0.66 | 0.812521 |
Target: 5'- --cGGCCAgcgcacggcgcacugCaCGGCGGgcAGCAGCUGCa -3' miRNA: 3'- auuCCGGUa--------------G-GUCGCU--UCGUCGGCGg -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 141436 | 0.66 | 0.811642 |
Target: 5'- --cGGCCAaCCGGCGGAuaAcuCCGCCc -3' miRNA: 3'- auuCCGGUaGGUCGCUUcgUc-GGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 77557 | 0.66 | 0.811642 |
Target: 5'- cGAGGCCA-CCAGUacgcuGGAuCGGCCGUUc -3' miRNA: 3'- aUUCCGGUaGGUCG-----CUUcGUCGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 136662 | 0.66 | 0.811642 |
Target: 5'- -cGGGCguUCCuguaccGGCGAAcCAGCCGUUg -3' miRNA: 3'- auUCCGguAGG------UCGCUUcGUCGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 94947 | 0.66 | 0.811642 |
Target: 5'- --uGGCUcgcGUCCGGCGAccGC-GCCgGCCa -3' miRNA: 3'- auuCCGG---UAGGUCGCUu-CGuCGG-CGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 96739 | 0.66 | 0.811642 |
Target: 5'- --cGGUgGUgCAGUucGAGCAGCCGCg -3' miRNA: 3'- auuCCGgUAgGUCGc-UUCGUCGGCGg -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 24694 | 0.66 | 0.802768 |
Target: 5'- --cGGCCcggcCCGGUGgcGCGGgCCGCg -3' miRNA: 3'- auuCCGGua--GGUCGCuuCGUC-GGCGg -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 96128 | 0.66 | 0.802768 |
Target: 5'- ---cGCCGcCCGGacu-GCAGCCGCCc -3' miRNA: 3'- auucCGGUaGGUCgcuuCGUCGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home