miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 62951 0.66 0.828888
Target:  5'- aAAGcGCUc-CCAGUGaAAGCGGCCGgCg -3'
miRNA:   3'- aUUC-CGGuaGGUCGC-UUCGUCGGCgG- -5'
5571 3' -57.6 NC_001806.1 + 127897 0.66 0.828888
Target:  5'- -uAGGCgCggGUgCAGCGGAGCacGGCCauGCCg -3'
miRNA:   3'- auUCCG-G--UAgGUCGCUUCG--UCGG--CGG- -5'
5571 3' -57.6 NC_001806.1 + 57655 0.66 0.828888
Target:  5'- gGGGGCCccCCcggaaGGCGGAGaAGgCGCCg -3'
miRNA:   3'- aUUCCGGuaGG-----UCGCUUCgUCgGCGG- -5'
5571 3' -57.6 NC_001806.1 + 30014 0.66 0.828888
Target:  5'- uUGGGGUUGUUgaagcggaGGCGggGCGGCCgagggGCCg -3'
miRNA:   3'- -AUUCCGGUAGg-------UCGCuuCGUCGG-----CGG- -5'
5571 3' -57.6 NC_001806.1 + 69221 0.66 0.826346
Target:  5'- ---uGCCGucUCCAGCcugcugcagcucggGGAGCAGCCcuccGCCg -3'
miRNA:   3'- auucCGGU--AGGUCG--------------CUUCGUCGG----CGG- -5'
5571 3' -57.6 NC_001806.1 + 107379 0.66 0.820351
Target:  5'- --cGGCgGUgCAGCGGGaacGCGcCCGCCg -3'
miRNA:   3'- auuCCGgUAgGUCGCUU---CGUcGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 34762 0.66 0.820351
Target:  5'- gGGGGCaaagCCGGCGggGCGGuUCGg- -3'
miRNA:   3'- aUUCCGgua-GGUCGCuuCGUC-GGCgg -5'
5571 3' -57.6 NC_001806.1 + 52558 0.66 0.820351
Target:  5'- cGGGGCCucccCCGGaCGAcauGGcCAGCgGCCc -3'
miRNA:   3'- aUUCCGGua--GGUC-GCU---UC-GUCGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 134227 0.66 0.820351
Target:  5'- -uAGGCCAcgcagUCgGaGCGggGgGGCgGCCc -3'
miRNA:   3'- auUCCGGU-----AGgU-CGCuuCgUCGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 143371 0.66 0.820351
Target:  5'- gGGGGCCGgcagaccgaCGGCGAcaacgcuccccGGCGGCCGg- -3'
miRNA:   3'- aUUCCGGUag-------GUCGCU-----------UCGUCGGCgg -5'
5571 3' -57.6 NC_001806.1 + 72675 0.66 0.819488
Target:  5'- aGAGGCCAagcgcccgaaUCgGGCGcccgacgauguauGGGCGGUgGCCc -3'
miRNA:   3'- aUUCCGGU----------AGgUCGC-------------UUCGUCGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 18368 0.66 0.815146
Target:  5'- aUAGGGgCAggCGGUGGagaagcgcauuuuccGGCAGCCGUCc -3'
miRNA:   3'- -AUUCCgGUagGUCGCU---------------UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 1959 0.66 0.812521
Target:  5'- --cGGCCAgcgcacggcgcacugCaCGGCGGgcAGCAGCUGCa -3'
miRNA:   3'- auuCCGGUa--------------G-GUCGCU--UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 141436 0.66 0.811642
Target:  5'- --cGGCCAaCCGGCGGAuaAcuCCGCCc -3'
miRNA:   3'- auuCCGGUaGGUCGCUUcgUc-GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 77557 0.66 0.811642
Target:  5'- cGAGGCCA-CCAGUacgcuGGAuCGGCCGUUc -3'
miRNA:   3'- aUUCCGGUaGGUCG-----CUUcGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 136662 0.66 0.811642
Target:  5'- -cGGGCguUCCuguaccGGCGAAcCAGCCGUUg -3'
miRNA:   3'- auUCCGguAGG------UCGCUUcGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 94947 0.66 0.811642
Target:  5'- --uGGCUcgcGUCCGGCGAccGC-GCCgGCCa -3'
miRNA:   3'- auuCCGG---UAGGUCGCUu-CGuCGG-CGG- -5'
5571 3' -57.6 NC_001806.1 + 96739 0.66 0.811642
Target:  5'- --cGGUgGUgCAGUucGAGCAGCCGCg -3'
miRNA:   3'- auuCCGgUAgGUCGc-UUCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 24694 0.66 0.802768
Target:  5'- --cGGCCcggcCCGGUGgcGCGGgCCGCg -3'
miRNA:   3'- auuCCGGua--GGUCGCuuCGUC-GGCGg -5'
5571 3' -57.6 NC_001806.1 + 96128 0.66 0.802768
Target:  5'- ---cGCCGcCCGGacu-GCAGCCGCCc -3'
miRNA:   3'- auucCGGUaGGUCgcuuCGUCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.