miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 5' -58.1 NC_001806.1 + 128435 0.66 0.848021
Target:  5'- -gGGC-CaGCUgGCUGAuGCgAUGGGCCa -3'
miRNA:   3'- ugCUGuG-CGAgCGGCU-CGaUACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 55190 0.66 0.848021
Target:  5'- gGCGuCAC-CUCGCCGAuaaucaGCcgcUGGGUCg -3'
miRNA:   3'- -UGCuGUGcGAGCGGCU------CGau-ACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 150345 0.66 0.848021
Target:  5'- aGCGACcCGCggGCCaauGCgcgagGGGCCg -3'
miRNA:   3'- -UGCUGuGCGagCGGcu-CGaua--CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 51766 0.66 0.840093
Target:  5'- cUGGCGCGCacccCGUucaaGAGCg--GGGCCg -3'
miRNA:   3'- uGCUGUGCGa---GCGg---CUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 141642 0.66 0.840093
Target:  5'- gGCGGCACGUUCGCgCGcacGCUaaacgcaaguccGUGcgccuGGCCg -3'
miRNA:   3'- -UGCUGUGCGAGCG-GCu--CGA------------UAC-----CCGG- -5'
5571 5' -58.1 NC_001806.1 + 93853 0.66 0.838486
Target:  5'- aACGcACGCGC-CGCCGAcucccgGCUugccggucggcGGGCCc -3'
miRNA:   3'- -UGC-UGUGCGaGCGGCU------CGAua---------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 23010 0.66 0.831983
Target:  5'- cGCGACGCGCUggugcucaugCGCCu-GCgcgGGGaCCu -3'
miRNA:   3'- -UGCUGUGCGA----------GCGGcuCGauaCCC-GG- -5'
5571 5' -58.1 NC_001806.1 + 22185 0.66 0.831983
Target:  5'- gGCGGC-CGUgugggCGcCCGAGC--UGGGCg -3'
miRNA:   3'- -UGCUGuGCGa----GC-GGCUCGauACCCGg -5'
5571 5' -58.1 NC_001806.1 + 147714 0.66 0.831983
Target:  5'- -aGGCgGCGCUCGCac-GCacgGGGCCa -3'
miRNA:   3'- ugCUG-UGCGAGCGgcuCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 24405 0.66 0.823697
Target:  5'- cCGACGCGC-CGCCGcuGCgccUGuGCCg -3'
miRNA:   3'- uGCUGUGCGaGCGGCu-CGau-ACcCGG- -5'
5571 5' -58.1 NC_001806.1 + 94266 0.66 0.823697
Target:  5'- cGCGugGCGCgagGgCGAGCggcuccUGGGCa -3'
miRNA:   3'- -UGCugUGCGag-CgGCUCGau----ACCCGg -5'
5571 5' -58.1 NC_001806.1 + 90249 0.66 0.823697
Target:  5'- cCGACGuCGCcguggCGCCccuGGUcGUGGGCCu -3'
miRNA:   3'- uGCUGU-GCGa----GCGGc--UCGaUACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 45961 0.66 0.823697
Target:  5'- -aGACACGCUCGCgCcAGag--GGGCg -3'
miRNA:   3'- ugCUGUGCGAGCG-GcUCgauaCCCGg -5'
5571 5' -58.1 NC_001806.1 + 50658 0.66 0.823697
Target:  5'- -gGACGCGCaccggCGCCGGGaCgacgcgGcGGCCa -3'
miRNA:   3'- ugCUGUGCGa----GCGGCUC-Gaua---C-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 119873 0.66 0.823697
Target:  5'- gGCGACGCGCcCGCCcuccgcuGCUGUccucggcgcuGGCCa -3'
miRNA:   3'- -UGCUGUGCGaGCGGcu-----CGAUAc---------CCGG- -5'
5571 5' -58.1 NC_001806.1 + 23219 0.66 0.823697
Target:  5'- gGCGGCcagcgcaccggACGC-CGCCGAcgcGCUGgcGGCCg -3'
miRNA:   3'- -UGCUG-----------UGCGaGCGGCU---CGAUacCCGG- -5'
5571 5' -58.1 NC_001806.1 + 75483 0.66 0.820335
Target:  5'- cGCGACGCGCgcgaccaccggCGCgCGGGaaagccucgcGGGCCa -3'
miRNA:   3'- -UGCUGUGCGa----------GCG-GCUCgaua------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 134832 0.66 0.820335
Target:  5'- cGCGGCugGCggUCGCCGAcCUGgcgcaccucgcaGGCCa -3'
miRNA:   3'- -UGCUGugCG--AGCGGCUcGAUac----------CCGG- -5'
5571 5' -58.1 NC_001806.1 + 37170 0.66 0.815243
Target:  5'- uCGACGCGgUUGgCGAGCcu--GGCCa -3'
miRNA:   3'- uGCUGUGCgAGCgGCUCGauacCCGG- -5'
5571 5' -58.1 NC_001806.1 + 74478 0.66 0.814388
Target:  5'- -aGGCGCGCcgcagcucgggucUgGCCGAGCUGcGGcGCUu -3'
miRNA:   3'- ugCUGUGCG-------------AgCGGCUCGAUaCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.