miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5573 3' -56 NC_001806.1 + 137695 0.66 0.914747
Target:  5'- cGGGGCgcugccggccuUUacccgcagcaagugaUCGUCAuCGaCGAGGCCGGGCu -3'
miRNA:   3'- -CUCCG-----------AG---------------AGCAGU-GC-GUUCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 21741 0.66 0.912385
Target:  5'- -cGGC-CgaccaCG-CACGCGAGGCgCGGGCc -3'
miRNA:   3'- cuCCGaGa----GCaGUGCGUUCUG-GUCCG- -5'
5573 3' -56 NC_001806.1 + 83278 0.66 0.912385
Target:  5'- gGGGGUUCgggCGggCGCGgAGGACCccGCa -3'
miRNA:   3'- -CUCCGAGa--GCa-GUGCgUUCUGGucCG- -5'
5573 3' -56 NC_001806.1 + 112574 0.66 0.906313
Target:  5'- -cGGCgCUCGUgAUggGCAAGGCCGuGCg -3'
miRNA:   3'- cuCCGaGAGCAgUG--CGUUCUGGUcCG- -5'
5573 3' -56 NC_001806.1 + 103054 0.66 0.906313
Target:  5'- aGGGCgccugcgaUCUCGUgCACGUuccguucGAUCGGGCg -3'
miRNA:   3'- cUCCG--------AGAGCA-GUGCGuu-----CUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 67213 0.66 0.906313
Target:  5'- -cGGC-CUggCGgggCGCGCugguGGGCCAGGUg -3'
miRNA:   3'- cuCCGaGA--GCa--GUGCGu---UCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 63173 0.66 0.906313
Target:  5'- cAGGUUgUCGUUGcCGCGGGugCacugGGGCg -3'
miRNA:   3'- cUCCGAgAGCAGU-GCGUUCugG----UCCG- -5'
5573 3' -56 NC_001806.1 + 38418 0.66 0.905693
Target:  5'- gGGGGUcCUCGUCcagauCGCugucggaGAGGuCCAGGCc -3'
miRNA:   3'- -CUCCGaGAGCAGu----GCG-------UUCU-GGUCCG- -5'
5573 3' -56 NC_001806.1 + 82738 0.66 0.899362
Target:  5'- cGGGGCggcggCgUCGUCGgGCGcuuuuauAGGCCcGGCg -3'
miRNA:   3'- -CUCCGa----G-AGCAGUgCGU-------UCUGGuCCG- -5'
5573 3' -56 NC_001806.1 + 146953 0.66 0.896109
Target:  5'- cAGGCagucccccgugauagUCUUGuUCACGUAAGGCgacaGGGCg -3'
miRNA:   3'- cUCCG---------------AGAGC-AGUGCGUUCUGg---UCCG- -5'
5573 3' -56 NC_001806.1 + 51120 0.66 0.893464
Target:  5'- cGGGCgcacgUGUCggggagGCGCGcGACCGGGCu -3'
miRNA:   3'- cUCCGaga--GCAG------UGCGUuCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 151296 0.66 0.886693
Target:  5'- gGGGGCgg-CG--GCGguGGGCCGGGCc -3'
miRNA:   3'- -CUCCGagaGCagUGCguUCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 79504 0.66 0.886693
Target:  5'- -cGGCUCgCGaa--GCAcGACCGGGCg -3'
miRNA:   3'- cuCCGAGaGCagugCGUuCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 86608 0.67 0.86504
Target:  5'- gGGGGCagaaacagCG-CGCGCGAGAUguGGCu -3'
miRNA:   3'- -CUCCGaga-----GCaGUGCGUUCUGguCCG- -5'
5573 3' -56 NC_001806.1 + 64883 0.67 0.86504
Target:  5'- -cGGCgggaUCGgC-CGCAAGACCAGcGCc -3'
miRNA:   3'- cuCCGag--AGCaGuGCGUUCUGGUC-CG- -5'
5573 3' -56 NC_001806.1 + 12122 0.67 0.857393
Target:  5'- uGAGuGCUgUCgGUCGCGCGAcACaGGGCg -3'
miRNA:   3'- -CUC-CGAgAG-CAGUGCGUUcUGgUCCG- -5'
5573 3' -56 NC_001806.1 + 34019 0.67 0.841491
Target:  5'- gGGGGUgCUCGUCGauc--GACCGGGCu -3'
miRNA:   3'- -CUCCGaGAGCAGUgcguuCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 14605 0.68 0.833249
Target:  5'- uGAGGCcCggaaGUCGCGCAugcuucaugGGucCCGGGCa -3'
miRNA:   3'- -CUCCGaGag--CAGUGCGU---------UCu-GGUCCG- -5'
5573 3' -56 NC_001806.1 + 92679 0.68 0.833249
Target:  5'- -cGGCUCcUGUCGCGCGaggacaucgAGACCAucGCg -3'
miRNA:   3'- cuCCGAGaGCAGUGCGU---------UCUGGUc-CG- -5'
5573 3' -56 NC_001806.1 + 55923 0.68 0.833249
Target:  5'- -cGGCUagCGUUcccggcaaaGCGAGACCGGGCa -3'
miRNA:   3'- cuCCGAgaGCAGug-------CGUUCUGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.