Results 1 - 20 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5574 | 3' | -61.5 | NC_001806.1 | + | 23522 | 0.66 | 0.63519 |
Target: 5'- cGCCgagGGCCCCGaccCCCUggGcggcuggcggcggcaGCCCCc -3' miRNA: 3'- aUGGa--CCGGGGUca-GGGGuuC---------------UGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 118739 | 0.66 | 0.680705 |
Target: 5'- gUGCCUGGCggCCgCGGgaaUCCCCuGGccGCCCUg -3' miRNA: 3'- -AUGGACCG--GG-GUC---AGGGGuUC--UGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 42384 | 0.66 | 0.621295 |
Target: 5'- gUACgUGGCCCCcgcGcCCCCcAGACgCUg -3' miRNA: 3'- -AUGgACCGGGGu--CaGGGGuUCUGgGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 30721 | 0.66 | 0.63122 |
Target: 5'- -uCCUcGGCCCCGacCCCCGcggGGGCCgCCu -3' miRNA: 3'- auGGA-CCGGGGUcaGGGGU---UCUGG-GG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 80511 | 0.66 | 0.641145 |
Target: 5'- aGCCccaaCCCCAG-CCCCA--ACCCCa -3' miRNA: 3'- aUGGacc-GGGGUCaGGGGUucUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 84820 | 0.66 | 0.621295 |
Target: 5'- cGCCgcGGCUCCGG-CCC--GGGCCCUa -3' miRNA: 3'- aUGGa-CCGGGGUCaGGGguUCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 46175 | 0.66 | 0.621295 |
Target: 5'- cGCCccccgGGCCCCccgaacccagcgGGUggcgacuaaggcCCCCGcGGCCCCg -3' miRNA: 3'- aUGGa----CCGGGG------------UCA------------GGGGUuCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 94011 | 0.66 | 0.641145 |
Target: 5'- gGCC--GCCCCGGUgUCCGAG-CCCa -3' miRNA: 3'- aUGGacCGGGGUCAgGGGUUCuGGGg -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 60601 | 0.66 | 0.621295 |
Target: 5'- uUACCgggGGCcacCCCGG-CCCCAGGucguCCUCc -3' miRNA: 3'- -AUGGa--CCG---GGGUCaGGGGUUCu---GGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 107688 | 0.66 | 0.621295 |
Target: 5'- -cCCUGauccgcGCCUUcGUCCCUGAGGCCUCa -3' miRNA: 3'- auGGAC------CGGGGuCAGGGGUUCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 107587 | 0.66 | 0.630227 |
Target: 5'- cGCgCUGGCUCaAG-CCacccgauCCGAGACCCCg -3' miRNA: 3'- aUG-GACCGGGgUCaGG-------GGUUCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 134975 | 0.66 | 0.621295 |
Target: 5'- gGCCgucgcGGCggccauCCCGGUgCCCGAuGCCCCc -3' miRNA: 3'- aUGGa----CCG------GGGUCAgGGGUUcUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 2777 | 0.66 | 0.63122 |
Target: 5'- gGCCUGcGCCgCGGcggCCCGGGGCgCCg -3' miRNA: 3'- aUGGAC-CGGgGUCag-GGGUUCUGgGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 67176 | 0.66 | 0.63122 |
Target: 5'- cAgCUGGCCCCAGgCCUC---GCCCa -3' miRNA: 3'- aUgGACCGGGGUCaGGGGuucUGGGg -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 22159 | 0.66 | 0.63122 |
Target: 5'- cGCCgguucgaGGCCUCGGgcgCCCCGgcggccguguGGGCgCCCg -3' miRNA: 3'- aUGGa------CCGGGGUCa--GGGGU----------UCUG-GGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 107628 | 0.66 | 0.641145 |
Target: 5'- -uCCUGGCCCagcagaCCCAcGGCCUCg -3' miRNA: 3'- auGGACCGGGgucag-GGGUuCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 4110 | 0.66 | 0.63122 |
Target: 5'- cGCCUccuccGCCUCGGgcgCCCCccaGAGGCCCg -3' miRNA: 3'- aUGGAc----CGGGGUCa--GGGG---UUCUGGGg -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 120799 | 0.66 | 0.622287 |
Target: 5'- cGCCguUGGCCCCcgccucuggGGUuugcccuccccccgcCCCCGgcauggcgcagcugGGACCCCg -3' miRNA: 3'- aUGG--ACCGGGG---------UCA---------------GGGGU--------------UCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 127035 | 0.66 | 0.63122 |
Target: 5'- cGCCgagcuaugGGCCUCucguUCUCCGGGGCCCg -3' miRNA: 3'- aUGGa-------CCGGGGuc--AGGGGUUCUGGGg -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 96545 | 0.66 | 0.641145 |
Target: 5'- -cCCUGGCgCCC---CCCCAacgggGGACCCg -3' miRNA: 3'- auGGACCG-GGGucaGGGGU-----UCUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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