miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5574 3' -61.5 NC_001806.1 + 118739 0.66 0.680705
Target:  5'- gUGCCUGGCggCCgCGGgaaUCCCCuGGccGCCCUg -3'
miRNA:   3'- -AUGGACCG--GG-GUC---AGGGGuUC--UGGGG- -5'
5574 3' -61.5 NC_001806.1 + 700 0.75 0.202408
Target:  5'- -cCCcGGCCCCAGcccUCCCC--GGCCCCa -3'
miRNA:   3'- auGGaCCGGGGUC---AGGGGuuCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 21506 0.75 0.206829
Target:  5'- gACCgGGCCCCGG-CCCgGggccgcgaacgggAGGCCCCg -3'
miRNA:   3'- aUGGaCCGGGGUCaGGGgU-------------UCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 1685 0.75 0.207326
Target:  5'- cGCCgGGCgCCauggcgucgguGGUCCCCGAGGCCgCCg -3'
miRNA:   3'- aUGGaCCGgGG-----------UCAGGGGUUCUGG-GG- -5'
5574 3' -61.5 NC_001806.1 + 17841 0.75 0.207326
Target:  5'- gGCgUGGaCCCCGuUCCCCGcGGCCCCc -3'
miRNA:   3'- aUGgACC-GGGGUcAGGGGUuCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 87268 0.75 0.207326
Target:  5'- -cCCUGGCCCCcuGGUaCCCCAcGugCCUg -3'
miRNA:   3'- auGGACCGGGG--UCA-GGGGUuCugGGG- -5'
5574 3' -61.5 NC_001806.1 + 65456 0.75 0.222704
Target:  5'- aUGCCgcGGCCCCcgGGUCCUgGGGGCgCCCg -3'
miRNA:   3'- -AUGGa-CCGGGG--UCAGGGgUUCUG-GGG- -5'
5574 3' -61.5 NC_001806.1 + 143594 0.75 0.222704
Target:  5'- aUACCcaGCCCCGGUCCCCcguuCCCCg -3'
miRNA:   3'- -AUGGacCGGGGUCAGGGGuucuGGGG- -5'
5574 3' -61.5 NC_001806.1 + 123748 0.74 0.228041
Target:  5'- aACCccacggGGCCuCCGGgcgCCCCAGcGGCCCCu -3'
miRNA:   3'- aUGGa-----CCGG-GGUCa--GGGGUU-CUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 668 0.75 0.202408
Target:  5'- -cCCcGGCCCCAGcccUCCCC--GGCCCCa -3'
miRNA:   3'- auGGaCCGGGGUC---AGGGGuuCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 636 0.75 0.202408
Target:  5'- -cCCcGGCCCCAGcccUCCCC--GGCCCCa -3'
miRNA:   3'- auGGaCCGGGGUC---AGGGGuuCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 3362 0.76 0.192875
Target:  5'- gGCCgGGCCCCGGccagCCCCGGGACggCCg -3'
miRNA:   3'- aUGGaCCGGGGUCa---GGGGUUCUGg-GG- -5'
5574 3' -61.5 NC_001806.1 + 32964 0.85 0.047418
Target:  5'- gGCCggGGCCCCuugGGUCCgCCGGGGCCCCg -3'
miRNA:   3'- aUGGa-CCGGGG---UCAGG-GGUUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 90422 0.8 0.100791
Target:  5'- cACCUGGaCCCCAG-CaCCC-AGGCCCCg -3'
miRNA:   3'- aUGGACC-GGGGUCaG-GGGuUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 57050 0.79 0.12013
Target:  5'- gGCCggGGCCCCcggcugcgugccgGGcUCCCCGAGACUCCa -3'
miRNA:   3'- aUGGa-CCGGGG-------------UC-AGGGGUUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 119618 0.78 0.143591
Target:  5'- gGCCgcuuugUGGCCCCAGcgCCCCAcGGGCCCg -3'
miRNA:   3'- aUGG------ACCGGGGUCa-GGGGU-UCUGGGg -5'
5574 3' -61.5 NC_001806.1 + 144993 0.78 0.143591
Target:  5'- gACCcaaggGGCCCCGG--CCCGGGGCCCCa -3'
miRNA:   3'- aUGGa----CCGGGGUCagGGGUUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 23097 0.77 0.15092
Target:  5'- aGCCUGGUCgCCGGggCCCuGGGCCCCg -3'
miRNA:   3'- aUGGACCGG-GGUCagGGGuUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 56260 0.77 0.162552
Target:  5'- aACCgGGCCCC-GUCCCCGGGGUCCUu -3'
miRNA:   3'- aUGGaCCGGGGuCAGGGGUUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 112246 0.77 0.166605
Target:  5'- cGCCUGGCCaCCAGgguggCCCgGGcGACCCUg -3'
miRNA:   3'- aUGGACCGG-GGUCa----GGGgUU-CUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.