Results 1 - 20 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5574 | 3' | -61.5 | NC_001806.1 | + | 126298 | 1.08 | 0.000971 |
Target: 5'- cUACCUGGCCCCAGUCCCCAAGACCCCc -3' miRNA: 3'- -AUGGACCGGGGUCAGGGGUUCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 32964 | 0.85 | 0.047418 |
Target: 5'- gGCCggGGCCCCuugGGUCCgCCGGGGCCCCg -3' miRNA: 3'- aUGGa-CCGGGG---UCAGG-GGUUCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 90422 | 0.8 | 0.100791 |
Target: 5'- cACCUGGaCCCCAG-CaCCC-AGGCCCCg -3' miRNA: 3'- aUGGACC-GGGGUCaG-GGGuUCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 57050 | 0.79 | 0.12013 |
Target: 5'- gGCCggGGCCCCcggcugcgugccgGGcUCCCCGAGACUCCa -3' miRNA: 3'- aUGGa-CCGGGG-------------UC-AGGGGUUCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 144993 | 0.78 | 0.143591 |
Target: 5'- gACCcaaggGGCCCCGG--CCCGGGGCCCCa -3' miRNA: 3'- aUGGa----CCGGGGUCagGGGUUCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 119618 | 0.78 | 0.143591 |
Target: 5'- gGCCgcuuugUGGCCCCAGcgCCCCAcGGGCCCg -3' miRNA: 3'- aUGG------ACCGGGGUCa-GGGGU-UCUGGGg -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 23097 | 0.77 | 0.15092 |
Target: 5'- aGCCUGGUCgCCGGggCCCuGGGCCCCg -3' miRNA: 3'- aUGGACCGG-GGUCagGGGuUCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 56260 | 0.77 | 0.162552 |
Target: 5'- aACCgGGCCCC-GUCCCCGGGGUCCUu -3' miRNA: 3'- aUGGaCCGGGGuCAGGGGUUCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 112246 | 0.77 | 0.166605 |
Target: 5'- cGCCUGGCCaCCAGgguggCCCgGGcGACCCUg -3' miRNA: 3'- aUGGACCGG-GGUCa----GGGgUU-CUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 3362 | 0.76 | 0.192875 |
Target: 5'- gGCCgGGCCCCGGccagCCCCGGGACggCCg -3' miRNA: 3'- aUGGaCCGGGGUCa---GGGGUUCUGg-GG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 700 | 0.75 | 0.202408 |
Target: 5'- -cCCcGGCCCCAGcccUCCCC--GGCCCCa -3' miRNA: 3'- auGGaCCGGGGUC---AGGGGuuCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 668 | 0.75 | 0.202408 |
Target: 5'- -cCCcGGCCCCAGcccUCCCC--GGCCCCa -3' miRNA: 3'- auGGaCCGGGGUC---AGGGGuuCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 636 | 0.75 | 0.202408 |
Target: 5'- -cCCcGGCCCCAGcccUCCCC--GGCCCCa -3' miRNA: 3'- auGGaCCGGGGUC---AGGGGuuCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 21506 | 0.75 | 0.206829 |
Target: 5'- gACCgGGCCCCGG-CCCgGggccgcgaacgggAGGCCCCg -3' miRNA: 3'- aUGGaCCGGGGUCaGGGgU-------------UCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 1685 | 0.75 | 0.207326 |
Target: 5'- cGCCgGGCgCCauggcgucgguGGUCCCCGAGGCCgCCg -3' miRNA: 3'- aUGGaCCGgGG-----------UCAGGGGUUCUGG-GG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 17841 | 0.75 | 0.207326 |
Target: 5'- gGCgUGGaCCCCGuUCCCCGcGGCCCCc -3' miRNA: 3'- aUGgACC-GGGGUcAGGGGUuCUGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 87268 | 0.75 | 0.207326 |
Target: 5'- -cCCUGGCCCCcuGGUaCCCCAcGugCCUg -3' miRNA: 3'- auGGACCGGGG--UCA-GGGGUuCugGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 65456 | 0.75 | 0.222704 |
Target: 5'- aUGCCgcGGCCCCcgGGUCCUgGGGGCgCCCg -3' miRNA: 3'- -AUGGa-CCGGGG--UCAGGGgUUCUG-GGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 143594 | 0.75 | 0.222704 |
Target: 5'- aUACCcaGCCCCGGUCCCCcguuCCCCg -3' miRNA: 3'- -AUGGacCGGGGUCAGGGGuucuGGGG- -5' |
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5574 | 3' | -61.5 | NC_001806.1 | + | 123748 | 0.74 | 0.228041 |
Target: 5'- aACCccacggGGCCuCCGGgcgCCCCAGcGGCCCCu -3' miRNA: 3'- aUGGa-----CCGG-GGUCa--GGGGUU-CUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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