miRNA display CGI


Results 1 - 20 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5574 3' -61.5 NC_001806.1 + 600 0.68 0.504613
Target:  5'- -cCCUccccaGCCCCAGcccUCCCCA--GCCCCa -3'
miRNA:   3'- auGGAc----CGGGGUC---AGGGGUucUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 636 0.75 0.202408
Target:  5'- -cCCcGGCCCCAGcccUCCCC--GGCCCCa -3'
miRNA:   3'- auGGaCCGGGGUC---AGGGGuuCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 668 0.75 0.202408
Target:  5'- -cCCcGGCCCCAGcccUCCCC--GGCCCCa -3'
miRNA:   3'- auGGaCCGGGGUC---AGGGGuuCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 700 0.75 0.202408
Target:  5'- -cCCcGGCCCCAGcccUCCCC--GGCCCCa -3'
miRNA:   3'- auGGaCCGGGGUC---AGGGGuuCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 1685 0.75 0.207326
Target:  5'- cGCCgGGCgCCauggcgucgguGGUCCCCGAGGCCgCCg -3'
miRNA:   3'- aUGGaCCGgGG-----------UCAGGGGUUCUGG-GG- -5'
5574 3' -61.5 NC_001806.1 + 2093 0.67 0.600486
Target:  5'- gGCgCUGGCgagcagcCCCAGaaaCUCCAcGGCCCCg -3'
miRNA:   3'- aUG-GACCG-------GGGUCa--GGGGUuCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 2298 0.69 0.467701
Target:  5'- -uCCggcGGCCC----CCCCGAGGCCCCg -3'
miRNA:   3'- auGGa--CCGGGgucaGGGGUUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 2777 0.66 0.63122
Target:  5'- gGCCUGcGCCgCGGcggCCCGGGGCgCCg -3'
miRNA:   3'- aUGGAC-CGGgGUCag-GGGUUCUGgGG- -5'
5574 3' -61.5 NC_001806.1 + 3120 0.67 0.611377
Target:  5'- gGCgCgGGUCCCgcggcagcgcGGggCCCAGGGCCCCg -3'
miRNA:   3'- aUG-GaCCGGGG----------UCagGGGUUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 3362 0.76 0.192875
Target:  5'- gGCCgGGCCCCGGccagCCCCGGGACggCCg -3'
miRNA:   3'- aUGGaCCGGGGUCa---GGGGUUCUGg-GG- -5'
5574 3' -61.5 NC_001806.1 + 3669 0.72 0.335997
Target:  5'- cGCC-GGCgCCGGggcUCCCCGcGGCCCCc -3'
miRNA:   3'- aUGGaCCGgGGUC---AGGGGUuCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 3937 0.69 0.467701
Target:  5'- gGCCUGGUCCagcgccacGUCCCCgGGGACCa- -3'
miRNA:   3'- aUGGACCGGGgu------CAGGGG-UUCUGGgg -5'
5574 3' -61.5 NC_001806.1 + 4065 0.69 0.449772
Target:  5'- cGCCcacacGGCCgCCGGggCgCCCGAGGCCUCg -3'
miRNA:   3'- aUGGa----CCGG-GGUCa-G-GGGUUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 4110 0.66 0.63122
Target:  5'- cGCCUccuccGCCUCGGgcgCCCCccaGAGGCCCg -3'
miRNA:   3'- aUGGAc----CGGGGUCa--GGGG---UUCUGGGg -5'
5574 3' -61.5 NC_001806.1 + 4725 0.69 0.476802
Target:  5'- gGCCUcccguucgcGGCCCCGGg--CCGGGGCCCg -3'
miRNA:   3'- aUGGA---------CCGGGGUCaggGGUUCUGGGg -5'
5574 3' -61.5 NC_001806.1 + 5516 0.68 0.552408
Target:  5'- gGCCgccGGCCCCccgcccCCCCGgcGGGCCCa -3'
miRNA:   3'- aUGGa--CCGGGGuca---GGGGU--UCUGGGg -5'
5574 3' -61.5 NC_001806.1 + 5831 0.67 0.571921
Target:  5'- cGCCcguUGGCC---GUCCCCGGGcCCCCc -3'
miRNA:   3'- aUGG---ACCGGgguCAGGGGUUCuGGGG- -5'
5574 3' -61.5 NC_001806.1 + 7022 0.67 0.611377
Target:  5'- aACCcccGGCCCCAGUUgggCCgGGcGACCCa -3'
miRNA:   3'- aUGGa--CCGGGGUCAG---GGgUU-CUGGGg -5'
5574 3' -61.5 NC_001806.1 + 7250 0.66 0.621295
Target:  5'- cGCCaacaauCCCCAGgacaccgcguguUCCCCGGGAgCCCCg -3'
miRNA:   3'- aUGGacc---GGGGUC------------AGGGGUUCU-GGGG- -5'
5574 3' -61.5 NC_001806.1 + 7313 0.68 0.523536
Target:  5'- aACCUaGGgaaCCCAGaguaccgcgagcUCCCaGAGACCCCa -3'
miRNA:   3'- aUGGA-CCg--GGGUC------------AGGGgUUCUGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.