miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 5' -58.7 NC_001806.1 + 150986 0.68 0.658195
Target:  5'- -cCCACGAGCCgCGGCGcGCCaggcgggCGgCCGAg -3'
miRNA:   3'- aaGGUGCUUGG-GUCGC-UGGa------GC-GGCU- -5'
5575 5' -58.7 NC_001806.1 + 150817 0.66 0.790475
Target:  5'- cUCCGCGGaagACCCAgGCcGCCUCGgguguaacguuagaCCGAg -3'
miRNA:   3'- aAGGUGCU---UGGGU-CGcUGGAGC--------------GGCU- -5'
5575 5' -58.7 NC_001806.1 + 147655 0.68 0.668244
Target:  5'- gUCCGCGGGgCgGGCGGCCggcucCGCCc- -3'
miRNA:   3'- aAGGUGCUUgGgUCGCUGGa----GCGGcu -5'
5575 5' -58.7 NC_001806.1 + 139737 0.66 0.784157
Target:  5'- -gCCACG---CCAG-GGCCUCGCUGAc -3'
miRNA:   3'- aaGGUGCuugGGUCgCUGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 138683 0.66 0.775019
Target:  5'- -gCCugGAugcgACCCAGagGACCcUCGCCu- -3'
miRNA:   3'- aaGGugCU----UGGGUCg-CUGG-AGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 135810 0.66 0.793162
Target:  5'- -cCCGCaGACCC-GCGGcuguuuccgcCCUUGCCGAa -3'
miRNA:   3'- aaGGUGcUUGGGuCGCU----------GGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 134830 0.66 0.809877
Target:  5'- -aCCGCGGcuggcggucgccgACCUGGCGcACCUCGCa-- -3'
miRNA:   3'- aaGGUGCU-------------UGGGUCGC-UGGAGCGgcu -5'
5575 5' -58.7 NC_001806.1 + 132727 0.75 0.315277
Target:  5'- -cCCGCGAgcugGCCCGGCGugGCCUCGgCGGc -3'
miRNA:   3'- aaGGUGCU----UGGGUCGC--UGGAGCgGCU- -5'
5575 5' -58.7 NC_001806.1 + 131460 0.72 0.462268
Target:  5'- gUCCGCGGA-CCGGCGGCgCUguUGCCGGa -3'
miRNA:   3'- aAGGUGCUUgGGUCGCUG-GA--GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 126682 0.69 0.617876
Target:  5'- gUCCugGAGCuCCGGgGAUCUggucCGCCGc -3'
miRNA:   3'- aAGGugCUUG-GGUCgCUGGA----GCGGCu -5'
5575 5' -58.7 NC_001806.1 + 126461 0.66 0.802026
Target:  5'- aUCC-CGaAGCCCAGCGugCgauacuucgCGCCc- -3'
miRNA:   3'- aAGGuGC-UUGGGUCGCugGa--------GCGGcu -5'
5575 5' -58.7 NC_001806.1 + 126371 0.68 0.658195
Target:  5'- -cCCAUGGAcCCCAGCGACCccacgGCCu- -3'
miRNA:   3'- aaGGUGCUU-GGGUCGCUGGag---CGGcu -5'
5575 5' -58.7 NC_001806.1 + 126175 1.06 0.002437
Target:  5'- cUUCCACGAACCCAGCGACCUCGCCGAa -3'
miRNA:   3'- -AAGGUGCUUGGGUCGCUGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 125844 0.67 0.746895
Target:  5'- -gCCGCGGGCCCccGGCcGCCgcggaCGCCGu -3'
miRNA:   3'- aaGGUGCUUGGG--UCGcUGGa----GCGGCu -5'
5575 5' -58.7 NC_001806.1 + 125566 0.71 0.528413
Target:  5'- cUCCugGGggcACCCAcgcccGCGACCcggaCGCCGAu -3'
miRNA:   3'- aAGGugCU---UGGGU-----CGCUGGa---GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 125255 0.69 0.607804
Target:  5'- gUCCACGGuagGCCCAGC-AUgUCcGCCGGg -3'
miRNA:   3'- aAGGUGCU---UGGGUCGcUGgAG-CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 124565 0.69 0.638045
Target:  5'- cUCCACGAucGCCCGGgGgcaguuuuGCCUCcaggaGCCGGa -3'
miRNA:   3'- aAGGUGCU--UGGGUCgC--------UGGAG-----CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 123240 0.71 0.499578
Target:  5'- -cCCACGcGGCCCuGCGccgacGCCUgGCCGAg -3'
miRNA:   3'- aaGGUGC-UUGGGuCGC-----UGGAgCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 120881 0.68 0.668244
Target:  5'- -gCCugGuccCCCGGgGACCUUGCCc- -3'
miRNA:   3'- aaGGugCuu-GGGUCgCUGGAGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 118447 0.66 0.810741
Target:  5'- aUCCggGCGAAUaaAGuUGGCCUCGUCGAc -3'
miRNA:   3'- aAGG--UGCUUGggUC-GCUGGAGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.