miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5579 3' -63.8 NC_001806.1 + 100644 0.65 0.60813
Target:  5'- -gCCUGCCGCCGccgCuCGGCCaccaggcUCCaGCGg -3'
miRNA:   3'- caGGGCGGUGGCua-G-GCCGG-------AGG-CGC- -5'
5579 3' -63.8 NC_001806.1 + 83769 0.65 0.606204
Target:  5'- -gUCUGCCAcCCGggCCcucaucggaaccuuGGCCUCCGgGg -3'
miRNA:   3'- caGGGCGGU-GGCuaGG--------------CCGGAGGCgC- -5'
5579 3' -63.8 NC_001806.1 + 135050 0.66 0.599467
Target:  5'- --aCCGCgAuCUGGaCCGGCC-CCGCGg -3'
miRNA:   3'- cagGGCGgU-GGCUaGGCCGGaGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 46080 0.66 0.599467
Target:  5'- cGUCCCGUUuCCGGggcgguuuugUCCGGCCcggggCCuGCGc -3'
miRNA:   3'- -CAGGGCGGuGGCU----------AGGCCGGa----GG-CGC- -5'
5579 3' -63.8 NC_001806.1 + 100380 0.66 0.599467
Target:  5'- cUCCCGUCGCCGGg-CGGCgCgggggCCGgGg -3'
miRNA:   3'- cAGGGCGGUGGCUagGCCG-Ga----GGCgC- -5'
5579 3' -63.8 NC_001806.1 + 21910 0.66 0.589862
Target:  5'- ---gCGCCGCCGggCCcgcgcggcgguGGCCggCCGCGa -3'
miRNA:   3'- caggGCGGUGGCuaGG-----------CCGGa-GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 31275 0.66 0.589862
Target:  5'- uUCCgcaGCCugCGGUCuCGGCaC-CCGUGg -3'
miRNA:   3'- cAGGg--CGGugGCUAG-GCCG-GaGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 112462 0.66 0.589862
Target:  5'- --aCCGCC-CCGAUCaaacaGcGCCUCCuGCa -3'
miRNA:   3'- cagGGCGGuGGCUAGg----C-CGGAGG-CGc -5'
5579 3' -63.8 NC_001806.1 + 138144 0.66 0.589862
Target:  5'- -cCCCGCCaACCuccCCGGCUggaCGCGg -3'
miRNA:   3'- caGGGCGG-UGGcuaGGCCGGag-GCGC- -5'
5579 3' -63.8 NC_001806.1 + 143550 0.66 0.580283
Target:  5'- -gCCCGgC-CCGGcCCGGCCaCCGCc -3'
miRNA:   3'- caGGGCgGuGGCUaGGCCGGaGGCGc -5'
5579 3' -63.8 NC_001806.1 + 131555 0.66 0.580283
Target:  5'- --aCCGCCccccccCCGucaCCGGUUUCCGCGa -3'
miRNA:   3'- cagGGCGGu-----GGCua-GGCCGGAGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 21144 0.66 0.580283
Target:  5'- -cCCCGggccCCACCGA-CgGGCCgCCGCc -3'
miRNA:   3'- caGGGC----GGUGGCUaGgCCGGaGGCGc -5'
5579 3' -63.8 NC_001806.1 + 50138 0.66 0.580283
Target:  5'- uGUCCCcCCA---AUCCGGCCccgacgCCGCGg -3'
miRNA:   3'- -CAGGGcGGUggcUAGGCCGGa-----GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 74480 0.66 0.580283
Target:  5'- -gCgCGCCGCagcucgGGUCUGGCCgagCUGCGg -3'
miRNA:   3'- caGgGCGGUGg-----CUAGGCCGGa--GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 28130 0.66 0.578371
Target:  5'- -cCCCGCC-CCGGagcgaguacccgCCGGCCUgagggCCGCc -3'
miRNA:   3'- caGGGCGGuGGCUa-----------GGCCGGA-----GGCGc -5'
5579 3' -63.8 NC_001806.1 + 23138 0.66 0.570738
Target:  5'- -cCCgCGCCuGCCGAgcUCCgcGGCCgccgccgCCGCGg -3'
miRNA:   3'- caGG-GCGG-UGGCU--AGG--CCGGa------GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 4931 0.66 0.570738
Target:  5'- cGUCCuCGCCGgCG-UCgGuGCCcgCCGCGg -3'
miRNA:   3'- -CAGG-GCGGUgGCuAGgC-CGGa-GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 72922 0.66 0.570738
Target:  5'- uUCCCaagcGCCGCCGAcccacCUGGaCUCCGCc -3'
miRNA:   3'- cAGGG----CGGUGGCUa----GGCCgGAGGCGc -5'
5579 3' -63.8 NC_001806.1 + 30450 0.66 0.567882
Target:  5'- cUCCCGCggCGCCGcccccUCCGGCgccgccccgcucccCUCCGCc -3'
miRNA:   3'- cAGGGCG--GUGGCu----AGGCCG--------------GAGGCGc -5'
5579 3' -63.8 NC_001806.1 + 106356 0.66 0.561231
Target:  5'- -cCCCGaCCGCCGGUUgGGgCC-CgGCGg -3'
miRNA:   3'- caGGGC-GGUGGCUAGgCC-GGaGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.