miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5579 5' -57.3 NC_001806.1 + 46915 0.66 0.861684
Target:  5'- cCGUGCGGGuuGCUuaaaugCgUGGUGGCGAc- -3'
miRNA:   3'- -GCGCGCCC--UGAua----GgGCUACCGCUua -5'
5579 5' -57.3 NC_001806.1 + 81663 0.66 0.861684
Target:  5'- uGUGUGGGGCgaaggcGUCCgGAacgcacUGGCGAu- -3'
miRNA:   3'- gCGCGCCCUGa-----UAGGgCU------ACCGCUua -5'
5579 5' -57.3 NC_001806.1 + 53886 0.66 0.854028
Target:  5'- cCGCGCGGGGaucaggGUCgCCGG-GGCGc-- -3'
miRNA:   3'- -GCGCGCCCUga----UAG-GGCUaCCGCuua -5'
5579 5' -57.3 NC_001806.1 + 68345 0.66 0.854028
Target:  5'- aCGCGCGGGACUG--CUGgcGGCc--- -3'
miRNA:   3'- -GCGCGCCCUGAUagGGCuaCCGcuua -5'
5579 5' -57.3 NC_001806.1 + 34361 0.66 0.854028
Target:  5'- -aCGgGGGACcggggcugggUAUCCCGAggugGGUGggUg -3'
miRNA:   3'- gcGCgCCCUG----------AUAGGGCUa---CCGCuuA- -5'
5579 5' -57.3 NC_001806.1 + 33975 0.66 0.854028
Target:  5'- uCGUGCGGGcCggggGUCgCCGGggcaggGGCGGGg -3'
miRNA:   3'- -GCGCGCCCuGa---UAG-GGCUa-----CCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 89774 0.66 0.846174
Target:  5'- aCGCGCGGGGCgugggagGggCUGG-GGCGGAc -3'
miRNA:   3'- -GCGCGCCCUGa------UagGGCUaCCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 21602 0.66 0.846174
Target:  5'- cCGcCGCGGaGACgucGUCacggCCGGUGGCGGc- -3'
miRNA:   3'- -GC-GCGCC-CUGa--UAG----GGCUACCGCUua -5'
5579 5' -57.3 NC_001806.1 + 100395 0.66 0.846174
Target:  5'- gGCGCgGGGGCcgggGUgCCCGAUGuCGGAa -3'
miRNA:   3'- gCGCG-CCCUGa---UA-GGGCUACcGCUUa -5'
5579 5' -57.3 NC_001806.1 + 70863 0.66 0.846174
Target:  5'- gGcCGCGGGACccgagCCCG-UGGcCGAGUu -3'
miRNA:   3'- gC-GCGCCCUGaua--GGGCuACC-GCUUA- -5'
5579 5' -57.3 NC_001806.1 + 5939 0.66 0.846174
Target:  5'- gCGgGCGGGACcg-CCCcaaGggGGCGGGg -3'
miRNA:   3'- -GCgCGCCCUGauaGGG---CuaCCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 6066 0.66 0.83813
Target:  5'- cCGCGCcggccccgGGGGCgggCCCGGgcGGCGGGg -3'
miRNA:   3'- -GCGCG--------CCCUGauaGGGCUa-CCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 3137 0.67 0.8299
Target:  5'- aGCGCGGGGCccagggCCCc--GGCGAc- -3'
miRNA:   3'- gCGCGCCCUGaua---GGGcuaCCGCUua -5'
5579 5' -57.3 NC_001806.1 + 30895 0.67 0.824877
Target:  5'- aCGCGCcacgcggagacuuccGGGGCcGUcCCCGcgGGCGGc- -3'
miRNA:   3'- -GCGCG---------------CCCUGaUA-GGGCuaCCGCUua -5'
5579 5' -57.3 NC_001806.1 + 68950 0.67 0.80418
Target:  5'- aGCGgGGGGCUgugGUCCCGccgccccuguUGGCGcAGUu -3'
miRNA:   3'- gCGCgCCCUGA---UAGGGCu---------ACCGC-UUA- -5'
5579 5' -57.3 NC_001806.1 + 33618 0.67 0.80418
Target:  5'- gGCGCGGGGCggggggCCgGAUacccacacgGGCGGGg -3'
miRNA:   3'- gCGCGCCCUGaua---GGgCUA---------CCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 109171 0.67 0.786253
Target:  5'- gGCGCGGGGCUccuccagcgCCCGGUcuGCGGc- -3'
miRNA:   3'- gCGCGCCCUGAua-------GGGCUAc-CGCUua -5'
5579 5' -57.3 NC_001806.1 + 18961 0.67 0.786253
Target:  5'- uGCGUGGGG--GUCCCG--GGCGAc- -3'
miRNA:   3'- gCGCGCCCUgaUAGGGCuaCCGCUua -5'
5579 5' -57.3 NC_001806.1 + 10411 0.68 0.777081
Target:  5'- aGC-CGGGGg-GUCCCGcUGGCGGGa -3'
miRNA:   3'- gCGcGCCCUgaUAGGGCuACCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 25516 0.68 0.777081
Target:  5'- aGCGCGGGACgcgCCgGGgagGGCuGGGg -3'
miRNA:   3'- gCGCGCCCUGauaGGgCUa--CCG-CUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.