miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5583 3' -60.2 NC_001806.1 + 75479 0.66 0.749054
Target:  5'- aGGCCGcGACgCGcgcGACCaccggcgcgcgggaaAGCCUCGCGGGc -3'
miRNA:   3'- cCCGGC-UUG-GC---UUGG---------------UCGGGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 4159 0.66 0.74534
Target:  5'- aGGCC--GCCGuacagcACCcGCCCCGgGGGc -3'
miRNA:   3'- cCCGGcuUGGCu-----UGGuCGGGGCgUCC- -5'
5583 3' -60.2 NC_001806.1 + 69085 0.66 0.763752
Target:  5'- cGGCCcucAGCCGcgUCAGCCCgCGCucGGc -3'
miRNA:   3'- cCCGGc--UUGGCuuGGUCGGG-GCGu-CC- -5'
5583 3' -60.2 NC_001806.1 + 66632 0.66 0.744409
Target:  5'- -aGCCGcuCCaGGGCCGGCUCCaacccgcGCGGGg -3'
miRNA:   3'- ccCGGCuuGG-CUUGGUCGGGG-------CGUCC- -5'
5583 3' -60.2 NC_001806.1 + 17803 0.66 0.754596
Target:  5'- uGGGCCGuGCCGAcUCGGUuuuugCCCGaguGGa -3'
miRNA:   3'- -CCCGGCuUGGCUuGGUCG-----GGGCgu-CC- -5'
5583 3' -60.2 NC_001806.1 + 115193 0.66 0.761016
Target:  5'- -uGUCG-ACCGAcgucaacuacuuccGCCGGCCCUGCAa- -3'
miRNA:   3'- ccCGGCuUGGCU--------------UGGUCGGGGCGUcc -5'
5583 3' -60.2 NC_001806.1 + 131984 0.66 0.735993
Target:  5'- -cGCCaGACCGGGCCGguggcccuguucGCCCCGCu-- -3'
miRNA:   3'- ccCGGcUUGGCUUGGU------------CGGGGCGucc -5'
5583 3' -60.2 NC_001806.1 + 55700 0.66 0.785273
Target:  5'- gGGGUCGAugugggggugaccuCCGGGCUGGCggcugaCCCGgGGGa -3'
miRNA:   3'- -CCCGGCUu-------------GGCUUGGUCG------GGGCgUCC- -5'
5583 3' -60.2 NC_001806.1 + 27367 0.66 0.754596
Target:  5'- uGGGCCGGGCCGc-CCAcuuCCCgGUAuGGu -3'
miRNA:   3'- -CCCGGCUUGGCuuGGUc--GGGgCGU-CC- -5'
5583 3' -60.2 NC_001806.1 + 112025 0.66 0.74534
Target:  5'- uGGCC--ACCGAgGCCAucGCCCUGCucacGGGg -3'
miRNA:   3'- cCCGGcuUGGCU-UGGU--CGGGGCG----UCC- -5'
5583 3' -60.2 NC_001806.1 + 147320 0.66 0.735993
Target:  5'- uGGCCGcGCCcccCCGGCCCUGagucggaGGGg -3'
miRNA:   3'- cCCGGCuUGGcuuGGUCGGGGCg------UCC- -5'
5583 3' -60.2 NC_001806.1 + 102051 0.66 0.754596
Target:  5'- uGGCCcccGAGUCGGACCcggaGGCCCCaCGGGc -3'
miRNA:   3'- cCCGG---CUUGGCUUGG----UCGGGGcGUCC- -5'
5583 3' -60.2 NC_001806.1 + 132659 0.66 0.74534
Target:  5'- gGGGCCGcGGCCGcuuacGCCGcGCuCCUGgGGGc -3'
miRNA:   3'- -CCCGGC-UUGGCu----UGGU-CG-GGGCgUCC- -5'
5583 3' -60.2 NC_001806.1 + 100178 0.66 0.74534
Target:  5'- uGGGCUGGGucCCGAgaaCAGCaCCC-CGGGa -3'
miRNA:   3'- -CCCGGCUU--GGCUug-GUCG-GGGcGUCC- -5'
5583 3' -60.2 NC_001806.1 + 139133 0.66 0.754596
Target:  5'- gGGGCUGAuguCCGuc---GCCCUGCAGa -3'
miRNA:   3'- -CCCGGCUu--GGCuugguCGGGGCGUCc -5'
5583 3' -60.2 NC_001806.1 + 35569 0.66 0.751829
Target:  5'- cGGcGCCGcGCCGAacgacgugcgcagcGCCggaguuuuGGCCCUgGCGGGu -3'
miRNA:   3'- -CC-CGGCuUGGCU--------------UGG--------UCGGGG-CGUCC- -5'
5583 3' -60.2 NC_001806.1 + 106156 0.66 0.754596
Target:  5'- cGGUCGAGCCGAccgcCCAGCCUccccccucgguCGCcccccuuaAGGg -3'
miRNA:   3'- cCCGGCUUGGCUu---GGUCGGG-----------GCG--------UCC- -5'
5583 3' -60.2 NC_001806.1 + 56253 0.66 0.763752
Target:  5'- -cGCCGccAACCGGGCCccGUCCC-CGGGg -3'
miRNA:   3'- ccCGGC--UUGGCUUGGu-CGGGGcGUCC- -5'
5583 3' -60.2 NC_001806.1 + 15705 0.66 0.733172
Target:  5'- aGGCCGGucggguguacggcgGgCGAuuguucCCGGCCgCGCGGGa -3'
miRNA:   3'- cCCGGCU--------------UgGCUu-----GGUCGGgGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 18455 0.66 0.735053
Target:  5'- uGGGCCcgggcguuccacgGAGCUGGuAUCGGCCacgaCCGCAGa -3'
miRNA:   3'- -CCCGG-------------CUUGGCU-UGGUCGG----GGCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.