Results 1 - 20 of 241 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5583 | 3' | -60.2 | NC_001806.1 | + | 55700 | 0.66 | 0.785273 |
Target: 5'- gGGGUCGAugugggggugaccuCCGGGCUGGCggcugaCCCGgGGGa -3' miRNA: 3'- -CCCGGCUu-------------GGCUUGGUCG------GGGCgUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 67363 | 0.76 | 0.235261 |
Target: 5'- aGGGCCGcccccCCGcGCaugguGCCCCGCAGGa -3' miRNA: 3'- -CCCGGCuu---GGCuUGgu---CGGGGCGUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 150949 | 0.76 | 0.235261 |
Target: 5'- cGGcGCCgGAACCGAGCCcggucGGCCCgcuCGCGGGc -3' miRNA: 3'- -CC-CGG-CUUGGCUUGG-----UCGGG---GCGUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 147686 | 0.76 | 0.246433 |
Target: 5'- gGGGCCGGGgCGcgggGGCgGGCCCCGgAGGc -3' miRNA: 3'- -CCCGGCUUgGC----UUGgUCGGGGCgUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 6049 | 0.76 | 0.252183 |
Target: 5'- uGGcGCCGugcCCGAcuccgcGCCGGCCCCGgGGGc -3' miRNA: 3'- -CC-CGGCuu-GGCU------UGGUCGGGGCgUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 1561 | 0.76 | 0.258041 |
Target: 5'- cGGGCCGGGCCGGcgcgcACC-GCCUCGCGc- -3' miRNA: 3'- -CCCGGCUUGGCU-----UGGuCGGGGCGUcc -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 10841 | 0.76 | 0.263409 |
Target: 5'- cGGCCcauaguaguuucuGggUCGGGCCGcGCCCCGUAGGc -3' miRNA: 3'- cCCGG-------------CuuGGCUUGGU-CGGGGCGUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 55252 | 0.75 | 0.278796 |
Target: 5'- aGGGUCGGcgcCCGGGCCGGCCCCcuccgcccagagcacGUGGGg -3' miRNA: 3'- -CCCGGCUu--GGCUUGGUCGGGG---------------CGUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 2811 | 0.75 | 0.282593 |
Target: 5'- uGGGCgGGGgCGGGCUcgGGCCCCGgGGGc -3' miRNA: 3'- -CCCGgCUUgGCUUGG--UCGGGGCgUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 89791 | 0.77 | 0.229837 |
Target: 5'- gGGGCUGGGgCGGACCGgcacGCCCC-CAGGa -3' miRNA: 3'- -CCCGGCUUgGCUUGGU----CGGGGcGUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 41195 | 0.77 | 0.224518 |
Target: 5'- aGGaGCUGAACCGcAGCCagAGCCCCGCGc- -3' miRNA: 3'- -CC-CGGCUUGGC-UUGG--UCGGGGCGUcc -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 80139 | 0.77 | 0.219304 |
Target: 5'- cGGCCGAGCCGAccucauCCucUCCCGCAGGu -3' miRNA: 3'- cCCGGCUUGGCUu-----GGucGGGGCGUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 34417 | 0.87 | 0.044979 |
Target: 5'- cGGGCCGGGCCGGGCCGGgCCgGguGGg -3' miRNA: 3'- -CCCGGCUUGGCUUGGUCgGGgCguCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 135044 | 0.87 | 0.049921 |
Target: 5'- cGGGCgaccgCGAuCUGGACCGGCCCCGCGGGg -3' miRNA: 3'- -CCCG-----GCUuGGCUUGGUCGGGGCGUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 66813 | 0.85 | 0.0647 |
Target: 5'- cGGCCGAGCgGGGCCGGCCCgGguGGc -3' miRNA: 3'- cCCGGCUUGgCUUGGUCGGGgCguCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 30292 | 0.84 | 0.07551 |
Target: 5'- gGGGCgGAGCCGGccGCCcGCCCCGCGGa -3' miRNA: 3'- -CCCGgCUUGGCU--UGGuCGGGGCGUCc -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 3360 | 0.82 | 0.097466 |
Target: 5'- cGGGCCGGGCCccgGCCAGCCCCGggacggccgcCAGGu -3' miRNA: 3'- -CCCGGCUUGGcu-UGGUCGGGGC----------GUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 150841 | 0.81 | 0.119245 |
Target: 5'- cGGGuguaacguuagaCCGAguucGCCGGGCCGGCUCCGCGGGc -3' miRNA: 3'- -CCC------------GGCU----UGGCUUGGUCGGGGCGUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 73987 | 0.79 | 0.172662 |
Target: 5'- -cGCCccgGCCGGGgCGGCCCCGCAGGg -3' miRNA: 3'- ccCGGcu-UGGCUUgGUCGGGGCGUCC- -5' |
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5583 | 3' | -60.2 | NC_001806.1 | + | 110227 | 0.78 | 0.194765 |
Target: 5'- gGGGCCGAACCGGACaCAGgcaaCCCCGacgugcguugcaCAGGc -3' miRNA: 3'- -CCCGGCUUGGCUUG-GUC----GGGGC------------GUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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