miRNA display CGI


Results 1 - 20 of 241 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5583 3' -60.2 NC_001806.1 + 1439 0.67 0.68817
Target:  5'- cGGGCgGcGCCGGcgGCagGGCCCC-CGGGc -3'
miRNA:   3'- -CCCGgCuUGGCU--UGg-UCGGGGcGUCC- -5'
5583 3' -60.2 NC_001806.1 + 1561 0.76 0.258041
Target:  5'- cGGGCCGGGCCGGcgcgcACC-GCCUCGCGc- -3'
miRNA:   3'- -CCCGGCUUGGCU-----UGGuCGGGGCGUcc -5'
5583 3' -60.2 NC_001806.1 + 1607 0.69 0.599032
Target:  5'- cGGGCCGcAgCGGcgcGCCcaGGCCCCagcgcgcGCAGGc -3'
miRNA:   3'- -CCCGGCuUgGCU---UGG--UCGGGG-------CGUCC- -5'
5583 3' -60.2 NC_001806.1 + 1726 0.69 0.600011
Target:  5'- cGGCCGuccagcGCCGGcaGCaCGGCCCgGCGGu -3'
miRNA:   3'- cCCGGCu-----UGGCU--UG-GUCGGGgCGUCc -5'
5583 3' -60.2 NC_001806.1 + 1905 0.75 0.302196
Target:  5'- cGGGCCGAAcacgcggcCCGAgGCCAGCaCCgugcggCGCAGGu -3'
miRNA:   3'- -CCCGGCUU--------GGCU-UGGUCG-GG------GCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 2221 0.66 0.779067
Target:  5'- cGGCCGuguccggcccgcacAGCCGGuugGCCagGGCCgCCaGCAGGc -3'
miRNA:   3'- cCCGGC--------------UUGGCU---UGG--UCGG-GG-CGUCC- -5'
5583 3' -60.2 NC_001806.1 + 2441 0.71 0.467655
Target:  5'- gGGGCCaaaGAGgCGGcccccGgCGGCCCCGUGGGg -3'
miRNA:   3'- -CCCGG---CUUgGCU-----UgGUCGGGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 2530 0.68 0.619623
Target:  5'- cGGGcCCGGcgcACCGcgcggcgaucgaGGCCAgGgCCCGCGGGu -3'
miRNA:   3'- -CCC-GGCU---UGGC------------UUGGU-CgGGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 2701 0.7 0.541889
Target:  5'- gGGGCU--GCCGccGCCAGCCgCC-CAGGg -3'
miRNA:   3'- -CCCGGcuUGGCu-UGGUCGG-GGcGUCC- -5'
5583 3' -60.2 NC_001806.1 + 2775 0.69 0.570771
Target:  5'- cGGGCCuGcGCCGcggcGGCCcggGGCgCCGCGGGc -3'
miRNA:   3'- -CCCGG-CuUGGC----UUGG---UCGgGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 2811 0.75 0.282593
Target:  5'- uGGGCgGGGgCGGGCUcgGGCCCCGgGGGc -3'
miRNA:   3'- -CCCGgCUUgGCUUGG--UCGGGGCgUCC- -5'
5583 3' -60.2 NC_001806.1 + 2949 0.75 0.302196
Target:  5'- cGGGCCGGGCCGGgacucuugcGCUugcGCCCCucccgcggcGCGGGg -3'
miRNA:   3'- -CCCGGCUUGGCU---------UGGu--CGGGG---------CGUCC- -5'
5583 3' -60.2 NC_001806.1 + 3192 0.69 0.561096
Target:  5'- cGGCCucGCUGccGCCGGCCaCgCGCAGGu -3'
miRNA:   3'- cCCGGcuUGGCu-UGGUCGG-G-GCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 3360 0.82 0.097466
Target:  5'- cGGGCCGGGCCccgGCCAGCCCCGggacggccgcCAGGu -3'
miRNA:   3'- -CCCGGCUUGGcu-UGGUCGGGGC----------GUCC- -5'
5583 3' -60.2 NC_001806.1 + 4159 0.66 0.74534
Target:  5'- aGGCC--GCCGuacagcACCcGCCCCGgGGGc -3'
miRNA:   3'- cCCGGcuUGGCu-----UGGuCGGGGCgUCC- -5'
5583 3' -60.2 NC_001806.1 + 4190 0.69 0.600011
Target:  5'- gGGGcCCGGcGCCGGGCCAcggcuCCCCGCuGa -3'
miRNA:   3'- -CCC-GGCU-UGGCUUGGUc----GGGGCGuCc -5'
5583 3' -60.2 NC_001806.1 + 4324 0.71 0.476663
Target:  5'- cGGCCGGccaccGCCGcGCgGGCCCgGCGGc -3'
miRNA:   3'- cCCGGCU-----UGGCuUGgUCGGGgCGUCc -5'
5583 3' -60.2 NC_001806.1 + 4662 0.66 0.763752
Target:  5'- cGGCUGGGCCGGcggGCgCGGCgacaggcggUCCGUGGGg -3'
miRNA:   3'- cCCGGCUUGGCU---UG-GUCG---------GGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 4723 0.66 0.772801
Target:  5'- gGGGCCuc-CCGuuCgCGGCCCCGggcCGGGg -3'
miRNA:   3'- -CCCGGcuuGGCuuG-GUCGGGGC---GUCC- -5'
5583 3' -60.2 NC_001806.1 + 5488 0.71 0.471248
Target:  5'- gGGGCCGGcgggaaggaggagcaGCgGAggccGCCGGCCCCccgcccccccgGCGGGc -3'
miRNA:   3'- -CCCGGCU---------------UGgCU----UGGUCGGGG-----------CGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.