miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5583 3' -60.2 NC_001806.1 + 122183 1.11 0.001009
Target:  5'- cGGGCCGAACCGAACCAGCCCCGCAGGc -3'
miRNA:   3'- -CCCGGCUUGGCUUGGUCGGGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 34417 0.87 0.044979
Target:  5'- cGGGCCGGGCCGGGCCGGgCCgGguGGg -3'
miRNA:   3'- -CCCGGCUUGGCUUGGUCgGGgCguCC- -5'
5583 3' -60.2 NC_001806.1 + 135044 0.87 0.049921
Target:  5'- cGGGCgaccgCGAuCUGGACCGGCCCCGCGGGg -3'
miRNA:   3'- -CCCG-----GCUuGGCUUGGUCGGGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 66813 0.85 0.0647
Target:  5'- cGGCCGAGCgGGGCCGGCCCgGguGGc -3'
miRNA:   3'- cCCGGCUUGgCUUGGUCGGGgCguCC- -5'
5583 3' -60.2 NC_001806.1 + 30292 0.84 0.07551
Target:  5'- gGGGCgGAGCCGGccGCCcGCCCCGCGGa -3'
miRNA:   3'- -CCCGgCUUGGCU--UGGuCGGGGCGUCc -5'
5583 3' -60.2 NC_001806.1 + 3360 0.82 0.097466
Target:  5'- cGGGCCGGGCCccgGCCAGCCCCGggacggccgcCAGGu -3'
miRNA:   3'- -CCCGGCUUGGcu-UGGUCGGGGC----------GUCC- -5'
5583 3' -60.2 NC_001806.1 + 150841 0.81 0.119245
Target:  5'- cGGGuguaacguuagaCCGAguucGCCGGGCCGGCUCCGCGGGc -3'
miRNA:   3'- -CCC------------GGCU----UGGCUUGGUCGGGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 73987 0.79 0.172662
Target:  5'- -cGCCccgGCCGGGgCGGCCCCGCAGGg -3'
miRNA:   3'- ccCGGcu-UGGCUUgGUCGGGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 110227 0.78 0.194765
Target:  5'- gGGGCCGAACCGGACaCAGgcaaCCCCGacgugcguugcaCAGGc -3'
miRNA:   3'- -CCCGGCUUGGCUUG-GUC----GGGGC------------GUCC- -5'
5583 3' -60.2 NC_001806.1 + 80139 0.77 0.219304
Target:  5'- cGGCCGAGCCGAccucauCCucUCCCGCAGGu -3'
miRNA:   3'- cCCGGCUUGGCUu-----GGucGGGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 41195 0.77 0.224518
Target:  5'- aGGaGCUGAACCGcAGCCagAGCCCCGCGc- -3'
miRNA:   3'- -CC-CGGCUUGGC-UUGG--UCGGGGCGUcc -5'
5583 3' -60.2 NC_001806.1 + 89791 0.77 0.229837
Target:  5'- gGGGCUGGGgCGGACCGgcacGCCCC-CAGGa -3'
miRNA:   3'- -CCCGGCUUgGCUUGGU----CGGGGcGUCC- -5'
5583 3' -60.2 NC_001806.1 + 67363 0.76 0.235261
Target:  5'- aGGGCCGcccccCCGcGCaugguGCCCCGCAGGa -3'
miRNA:   3'- -CCCGGCuu---GGCuUGgu---CGGGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 150949 0.76 0.235261
Target:  5'- cGGcGCCgGAACCGAGCCcggucGGCCCgcuCGCGGGc -3'
miRNA:   3'- -CC-CGG-CUUGGCUUGG-----UCGGG---GCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 147686 0.76 0.246433
Target:  5'- gGGGCCGGGgCGcgggGGCgGGCCCCGgAGGc -3'
miRNA:   3'- -CCCGGCUUgGC----UUGgUCGGGGCgUCC- -5'
5583 3' -60.2 NC_001806.1 + 6049 0.76 0.252183
Target:  5'- uGGcGCCGugcCCGAcuccgcGCCGGCCCCGgGGGc -3'
miRNA:   3'- -CC-CGGCuu-GGCU------UGGUCGGGGCgUCC- -5'
5583 3' -60.2 NC_001806.1 + 1561 0.76 0.258041
Target:  5'- cGGGCCGGGCCGGcgcgcACC-GCCUCGCGc- -3'
miRNA:   3'- -CCCGGCUUGGCU-----UGGuCGGGGCGUcc -5'
5583 3' -60.2 NC_001806.1 + 10841 0.76 0.263409
Target:  5'- cGGCCcauaguaguuucuGggUCGGGCCGcGCCCCGUAGGc -3'
miRNA:   3'- cCCGG-------------CuuGGCUUGGU-CGGGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 55252 0.75 0.278796
Target:  5'- aGGGUCGGcgcCCGGGCCGGCCCCcuccgcccagagcacGUGGGg -3'
miRNA:   3'- -CCCGGCUu--GGCUUGGUCGGGG---------------CGUCC- -5'
5583 3' -60.2 NC_001806.1 + 21951 0.75 0.282593
Target:  5'- cGGGCCcuucacGGCCGGG-CAGCCCCgGCGGGu -3'
miRNA:   3'- -CCCGGc-----UUGGCUUgGUCGGGG-CGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.