miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5588 3' -68.4 NC_001806.1 + 93628 0.66 0.414559
Target:  5'- aCgGGCGUUCCACGGGgaugaCCCGuuuggggaGGGGCc- -3'
miRNA:   3'- -GgUCGCGGGGUGCCC-----GGGC--------CCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 82721 0.66 0.414559
Target:  5'- gCGGUGUCCg--GGGUCUGcGGGGCGGc -3'
miRNA:   3'- gGUCGCGGGgugCCCGGGC-CCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 60090 0.66 0.414559
Target:  5'- --cGCGUUCUcCGGGCCCuGGGGUa- -3'
miRNA:   3'- gguCGCGGGGuGCCCGGGcCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 45296 0.66 0.414559
Target:  5'- gCGG-GCCCgCGCGGggagccGCCCGGcgaggaGGGCGGg -3'
miRNA:   3'- gGUCgCGGG-GUGCC------CGGGCC------CCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 26967 0.66 0.414559
Target:  5'- cCUGGCGCgCCGC-GGCUCGuGGGcccGCGAg -3'
miRNA:   3'- -GGUCGCGgGGUGcCCGGGC-CCC---CGCU- -5'
5588 3' -68.4 NC_001806.1 + 33633 0.66 0.414559
Target:  5'- nCCGGauaCCCaCACGGGCggGGGGGgGGu -3'
miRNA:   3'- -GGUCgc-GGG-GUGCCCGggCCCCCgCU- -5'
5588 3' -68.4 NC_001806.1 + 113385 0.66 0.414559
Target:  5'- gCGGCGUuccgggacgCCCG-GGGCCUggagcuGGGGGUGGg -3'
miRNA:   3'- gGUCGCG---------GGGUgCCCGGG------CCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 113294 0.66 0.414559
Target:  5'- gCCGGgGggggacguucCCCCgGCcGGCCCGGGGGaGAu -3'
miRNA:   3'- -GGUCgC----------GGGG-UGcCCGGGCCCCCgCU- -5'
5588 3' -68.4 NC_001806.1 + 115217 0.66 0.414559
Target:  5'- gCCGGCccugcaaCCCC-CGGGgacgcgccgCCGGGGGCGu -3'
miRNA:   3'- -GGUCGc------GGGGuGCCCg--------GGCCCCCGCu -5'
5588 3' -68.4 NC_001806.1 + 46123 0.66 0.414559
Target:  5'- -nGGCGCCuCCGCcacccgcuGGGUCCGGagGGGCc- -3'
miRNA:   3'- ggUCGCGG-GGUG--------CCCGGGCC--CCCGcu -5'
5588 3' -68.4 NC_001806.1 + 1732 0.66 0.414559
Target:  5'- uCCAGCGCCggcagCAC-GGCCCGGcGGUa- -3'
miRNA:   3'- -GGUCGCGGg----GUGcCCGGGCCcCCGcu -5'
5588 3' -68.4 NC_001806.1 + 2534 0.66 0.404272
Target:  5'- cCCGGCGCaCCgCGCggcgaucgaggccaGGGCCCGcGGGUc- -3'
miRNA:   3'- -GGUCGCG-GG-GUG--------------CCCGGGCcCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 34264 0.66 0.3988
Target:  5'- gCUGGgGgCUUAUaugugGGGuCCCGGGGGCGGg -3'
miRNA:   3'- -GGUCgCgGGGUG-----CCC-GGGCCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 95390 0.66 0.3988
Target:  5'- -gGGaGCUCC-CGGGggCGGGGGCGAg -3'
miRNA:   3'- ggUCgCGGGGuGCCCggGCCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 74076 0.66 0.3988
Target:  5'- cCCAG-GCCCguCGGGCgaUCGaGGGcGCGGu -3'
miRNA:   3'- -GGUCgCGGGguGCCCG--GGC-CCC-CGCU- -5'
5588 3' -68.4 NC_001806.1 + 24692 0.66 0.3988
Target:  5'- gCCGGCccgGCCCgguggCGCGGGCCgCGGaGGGa-- -3'
miRNA:   3'- -GGUCG---CGGG-----GUGCCCGG-GCC-CCCgcu -5'
5588 3' -68.4 NC_001806.1 + 77122 0.66 0.3988
Target:  5'- -gAGCGCCgaGCGGGCCgGGGccGUGGa -3'
miRNA:   3'- ggUCGCGGggUGCCCGGgCCCc-CGCU- -5'
5588 3' -68.4 NC_001806.1 + 61440 0.66 0.3988
Target:  5'- gCCAGCGCCgC-CGGGCUCaGGauauGGCu- -3'
miRNA:   3'- -GGUCGCGGgGuGCCCGGGcCC----CCGcu -5'
5588 3' -68.4 NC_001806.1 + 73163 0.66 0.3988
Target:  5'- uCCGGCGUCCuCACaGGCCCucGaGGCGc -3'
miRNA:   3'- -GGUCGCGGG-GUGcCCGGGccC-CCGCu -5'
5588 3' -68.4 NC_001806.1 + 20103 0.66 0.398022
Target:  5'- gCCGGCGCCguCUGCGGGCgUCGGucgcgccGGGCc- -3'
miRNA:   3'- -GGUCGCGG--GGUGCCCG-GGCC-------CCCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.