miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5589 5' -55.7 NC_001806.1 + 151544 0.68 0.865357
Target:  5'- uGGGCcCGGG-CGGCCGgGGGCggcgggggCCGc -3'
miRNA:   3'- -CCUGaGCCCuGCCGGCgUUUGaa------GGU- -5'
5589 5' -55.7 NC_001806.1 + 151448 0.84 0.149291
Target:  5'- gGGGCggcggCGGGGCGGCCGCGGGCgcgcUCCu -3'
miRNA:   3'- -CCUGa----GCCCUGCCGGCGUUUGa---AGGu -5'
5589 5' -55.7 NC_001806.1 + 147750 0.71 0.703351
Target:  5'- gGGGCgcgCGGGucccgacGCGGCCGCGGACgcggggggCCc -3'
miRNA:   3'- -CCUGa--GCCC-------UGCCGGCGUUUGaa------GGu -5'
5589 5' -55.7 NC_001806.1 + 141589 0.68 0.841232
Target:  5'- --cCUCGGGAuaacaguucuugaCGGCCGCcaAGACaUUCCGa -3'
miRNA:   3'- ccuGAGCCCU-------------GCCGGCG--UUUG-AAGGU- -5'
5589 5' -55.7 NC_001806.1 + 141420 0.66 0.921984
Target:  5'- aGGC-CGGGGCGGCgCGCGgccaaccggcggauAACU-CCGc -3'
miRNA:   3'- cCUGaGCCCUGCCG-GCGU--------------UUGAaGGU- -5'
5589 5' -55.7 NC_001806.1 + 139210 0.68 0.833881
Target:  5'- cGGACgagcugCGGaGGCGGCaCGC-GACggCCAa -3'
miRNA:   3'- -CCUGa-----GCC-CUGCCG-GCGuUUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 135572 0.73 0.592951
Target:  5'- cGGACUCGGccgccagguCGGCCGCGcGCUgcuggcgcUCCAg -3'
miRNA:   3'- -CCUGAGCCcu-------GCCGGCGUuUGA--------AGGU- -5'
5589 5' -55.7 NC_001806.1 + 133237 0.66 0.923625
Target:  5'- cGGGCcaUCGaGACGGCCGUggGag-CCGu -3'
miRNA:   3'- -CCUG--AGCcCUGCCGGCGuuUgaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 126875 0.68 0.85001
Target:  5'- aGGACggcgcCGGGGCucucggGGCCGCAGGac-CCAg -3'
miRNA:   3'- -CCUGa----GCCCUG------CCGGCGUUUgaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 120322 0.67 0.879874
Target:  5'- gGGGgaCGGGGCGGUCGgGGGCggcgggucgUCCc -3'
miRNA:   3'- -CCUgaGCCCUGCCGGCgUUUGa--------AGGu -5'
5589 5' -55.7 NC_001806.1 + 118789 1.11 0.002408
Target:  5'- cGGACUCGGGACGGCCGCAAACUUCCAg -3'
miRNA:   3'- -CCUGAGCCCUGCCGGCGUUUGAAGGU- -5'
5589 5' -55.7 NC_001806.1 + 117984 0.75 0.447617
Target:  5'- aGGCUCGGGuguUGGCCGUGAACgcgggaUCCAc -3'
miRNA:   3'- cCUGAGCCCu--GCCGGCGUUUGa-----AGGU- -5'
5589 5' -55.7 NC_001806.1 + 99772 0.71 0.704348
Target:  5'- aGGGC-CGGGugGGUCGUuguuGgUUCCGg -3'
miRNA:   3'- -CCUGaGCCCugCCGGCGuu--UgAAGGU- -5'
5589 5' -55.7 NC_001806.1 + 95961 0.66 0.906259
Target:  5'- gGGGCUCGGGugcugauugGGCCGUcagcGAAUUUCa- -3'
miRNA:   3'- -CCUGAGCCCug-------CCGGCG----UUUGAAGgu -5'
5589 5' -55.7 NC_001806.1 + 93596 0.74 0.523153
Target:  5'- gGGGCccCGGGAccggcauuugcCGGCCGCAAACgggcgUUCCAc -3'
miRNA:   3'- -CCUGa-GCCCU-----------GCCGGCGUUUG-----AAGGU- -5'
5589 5' -55.7 NC_001806.1 + 88101 0.71 0.714284
Target:  5'- gGGAUUCGGGGaGGUCGCAGGaa-CCGa -3'
miRNA:   3'- -CCUGAGCCCUgCCGGCGUUUgaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 86054 0.68 0.830567
Target:  5'- cGGGCUCguccccuGGGGCGGCgGCGucuagcucgcggagGGCggCCAg -3'
miRNA:   3'- -CCUGAG-------CCCUGCCGgCGU--------------UUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 85588 0.66 0.923625
Target:  5'- cGGACgCGGaGAuuccgaccguguCGGCCGCAGACaUUUAu -3'
miRNA:   3'- -CCUGaGCC-CU------------GCCGGCGUUUGaAGGU- -5'
5589 5' -55.7 NC_001806.1 + 84070 0.67 0.893519
Target:  5'- gGGAgUCGGGGCcccaGCUGCGcGCUgCCGc -3'
miRNA:   3'- -CCUgAGCCCUGc---CGGCGUuUGAaGGU- -5'
5589 5' -55.7 NC_001806.1 + 79866 0.67 0.886808
Target:  5'- -cGCUCGGGccccaGGCCGCcggccAGGCUUCUc -3'
miRNA:   3'- ccUGAGCCCug---CCGGCG-----UUUGAAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.