miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 3' -53.5 NC_001806.1 + 152050 0.7 0.881154
Target:  5'- gCCgCCCGGACCGccgcccgccuuuuuUGcGCGCGCGCgcgcccgcgGGg -3'
miRNA:   3'- -GG-GGGCUUGGU--------------ACuUGCGCGUGaa-------CC- -5'
5590 3' -53.5 NC_001806.1 + 151258 0.67 0.965033
Target:  5'- cCCCCCGGGCCc---ACGcCGgGCggUGGg -3'
miRNA:   3'- -GGGGGCUUGGuacuUGC-GCgUGa-ACC- -5'
5590 3' -53.5 NC_001806.1 + 150709 0.69 0.890128
Target:  5'- gCCCCCGAggcggcccGCCcuGUGAGgGCGgGC-UGGc -3'
miRNA:   3'- -GGGGGCU--------UGG--UACUUgCGCgUGaACC- -5'
5590 3' -53.5 NC_001806.1 + 147554 0.68 0.931691
Target:  5'- cCCCCCGAGCC----GCGCGcCACc--- -3'
miRNA:   3'- -GGGGGCUUGGuacuUGCGC-GUGaacc -5'
5590 3' -53.5 NC_001806.1 + 143183 0.66 0.976446
Target:  5'- cCCCCCGAACCGccc-CGC-CGCUUu- -3'
miRNA:   3'- -GGGGGCUUGGUacuuGCGcGUGAAcc -5'
5590 3' -53.5 NC_001806.1 + 141946 0.66 0.971143
Target:  5'- cCCCCCGuuuguuaaauCCAUGGgagggucgggggGCGCGgACgaGGa -3'
miRNA:   3'- -GGGGGCuu--------GGUACU------------UGCGCgUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 140714 0.69 0.89677
Target:  5'- gCCCCCGu-CUGUGGugGCGCGg--GGc -3'
miRNA:   3'- -GGGGGCuuGGUACUugCGCGUgaaCC- -5'
5590 3' -53.5 NC_001806.1 + 140465 0.66 0.976199
Target:  5'- gCCCCCGAgGCCAgcauGACGUuaucucgguggagGCGCaUUGGc -3'
miRNA:   3'- -GGGGGCU-UGGUac--UUGCG-------------CGUG-AACC- -5'
5590 3' -53.5 NC_001806.1 + 135223 0.67 0.958068
Target:  5'- uCCCCCaggaugacaucgGAGCCcgugAUGGGCGCGC-CUacccgGGg -3'
miRNA:   3'- -GGGGG------------CUUGG----UACUUGCGCGuGAa----CC- -5'
5590 3' -53.5 NC_001806.1 + 132944 0.66 0.976446
Target:  5'- aCCCCCacggccggacGGGCCuagcaagacUGGACGCGCuggUGGu -3'
miRNA:   3'- -GGGGG----------CUUGGu--------ACUUGCGCGugaACC- -5'
5590 3' -53.5 NC_001806.1 + 130783 0.67 0.955806
Target:  5'- aCCCCCGucugggagcuGuugugccugugcagcACCAUGGcCGCGCGCcugcaUUGGg -3'
miRNA:   3'- -GGGGGC----------U---------------UGGUACUuGCGCGUG-----AACC- -5'
5590 3' -53.5 NC_001806.1 + 129487 0.72 0.775862
Target:  5'- gUCCUCGGaucaucGCCAUGGacgcaaccgccaACGCGCAgUUGGu -3'
miRNA:   3'- -GGGGGCU------UGGUACU------------UGCGCGUgAACC- -5'
5590 3' -53.5 NC_001806.1 + 129081 0.69 0.913542
Target:  5'- gCCCCGAcggccaggugcgugACUGUGGucCGCGCGCcaaUGGg -3'
miRNA:   3'- gGGGGCU--------------UGGUACUu-GCGCGUGa--ACC- -5'
5590 3' -53.5 NC_001806.1 + 125851 0.68 0.931691
Target:  5'- gCCCCCGGccGCCGcGGACGCcgugGCGCcccGGc -3'
miRNA:   3'- -GGGGGCU--UGGUaCUUGCG----CGUGaa-CC- -5'
5590 3' -53.5 NC_001806.1 + 122277 0.66 0.976446
Target:  5'- uCCCCCGAaaggagGCCAgcGACaGCGCGaugagGGg -3'
miRNA:   3'- -GGGGGCU------UGGUacUUG-CGCGUgaa--CC- -5'
5590 3' -53.5 NC_001806.1 + 121843 0.68 0.931691
Target:  5'- cCCCCCG-ACCAgcgccgGGugGCGC-CUg-- -3'
miRNA:   3'- -GGGGGCuUGGUa-----CUugCGCGuGAacc -5'
5590 3' -53.5 NC_001806.1 + 121471 0.67 0.96166
Target:  5'- aCUgCUGGGCCAUGGACaGCG-ACcUGGg -3'
miRNA:   3'- -GGgGGCUUGGUACUUG-CGCgUGaACC- -5'
5590 3' -53.5 NC_001806.1 + 121400 0.74 0.647005
Target:  5'- cCCCCCgGAGCCggGcGCGUGCugcgcCUUGGg -3'
miRNA:   3'- -GGGGG-CUUGGuaCuUGCGCGu----GAACC- -5'
5590 3' -53.5 NC_001806.1 + 120831 0.71 0.845668
Target:  5'- cCCCCCGccCCcgGcAugGCGCAgcUGGg -3'
miRNA:   3'- -GGGGGCuuGGuaC-UugCGCGUgaACC- -5'
5590 3' -53.5 NC_001806.1 + 120182 0.69 0.890128
Target:  5'- gCCCCG-ACCAac-GCGCGUGgUUGGg -3'
miRNA:   3'- gGGGGCuUGGUacuUGCGCGUgAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.