miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 5' -60.2 NC_001806.1 + 151673 0.67 0.699473
Target:  5'- uGUCUAacuCGcuaGUCUCGGCCGggggGGCCCGg -3'
miRNA:   3'- -CAGGUcu-GC---UAGAGCCGGUg---CCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 151272 0.66 0.737825
Target:  5'- -gCCGGGCGGUgggGGCCGgGGCCgGg -3'
miRNA:   3'- caGGUCUGCUAgagCCGGUgCCGGgC- -5'
5590 5' -60.2 NC_001806.1 + 151003 0.72 0.382362
Target:  5'- -gCCAGGCGGg--CGGCCGaGGCCCa -3'
miRNA:   3'- caGGUCUGCUagaGCCGGUgCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 150865 0.7 0.532854
Target:  5'- -gCCGGGCcggCUCcgcgGGCCAgGGCCCGg -3'
miRNA:   3'- caGGUCUGcuaGAG----CCGGUgCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 147083 0.73 0.366581
Target:  5'- uUCCGGGCacacuucCUCGGCCcccGCGGCCCa -3'
miRNA:   3'- cAGGUCUGcua----GAGCCGG---UGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 144781 0.66 0.755593
Target:  5'- uGUCCccucacgGGGCGAa---GGCCgcguACGGCCCGg -3'
miRNA:   3'- -CAGG-------UCUGCUagagCCGG----UGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 144572 0.68 0.620734
Target:  5'- uUCCGGGCGcGUC-CGgguGCCGCGGCUCu -3'
miRNA:   3'- cAGGUCUGC-UAGaGC---CGGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 143413 0.66 0.728345
Target:  5'- gGUCgCGGcucuuACGAg--CGGCC-CGGCCCGc -3'
miRNA:   3'- -CAG-GUC-----UGCUagaGCCGGuGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 138332 0.66 0.765715
Target:  5'- -gCCuGACGAUUgaaaagUGGCuCACGGCCa- -3'
miRNA:   3'- caGGuCUGCUAGa-----GCCG-GUGCCGGgc -5'
5590 5' -60.2 NC_001806.1 + 136194 0.66 0.756519
Target:  5'- -aCCAGACGGUCccCGGuCCACaaggggGGCCa- -3'
miRNA:   3'- caGGUCUGCUAGa-GCC-GGUG------CCGGgc -5'
5590 5' -60.2 NC_001806.1 + 134913 0.68 0.630625
Target:  5'- -aCCAGgcuGCGGUCccCGGCgAUGGCCUGc -3'
miRNA:   3'- caGGUC---UGCUAGa-GCCGgUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 133725 0.68 0.640516
Target:  5'- cGUCCccGCGAUCUauacCCGCGGCCCc -3'
miRNA:   3'- -CAGGucUGCUAGAgcc-GGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 131863 0.69 0.56179
Target:  5'- cGUCCAGGCcGUCguggCGGCCGCccgcGCCgCGa -3'
miRNA:   3'- -CAGGUCUGcUAGa---GCCGGUGc---CGG-GC- -5'
5590 5' -60.2 NC_001806.1 + 128561 0.72 0.382362
Target:  5'- cGUCCAGggcGCGGUCguagcgggaGGUCACGGCgCCGa -3'
miRNA:   3'- -CAGGUC---UGCUAGag-------CCGGUGCCG-GGC- -5'
5590 5' -60.2 NC_001806.1 + 128040 0.72 0.415251
Target:  5'- -gCC-GACGAUgccCguggCGGCCACGGCCCc -3'
miRNA:   3'- caGGuCUGCUA---Ga---GCCGGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 126691 0.67 0.660274
Target:  5'- cUCCGGG-GAUCUgGuccGCCGCGaGCCCGu -3'
miRNA:   3'- cAGGUCUgCUAGAgC---CGGUGC-CGGGC- -5'
5590 5' -60.2 NC_001806.1 + 126069 0.7 0.532854
Target:  5'- uGUUCGGGCGggUgaaCGaGCCgACGGCCCGa -3'
miRNA:   3'- -CAGGUCUGCuaGa--GC-CGG-UGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 122530 0.66 0.737825
Target:  5'- cGUCCGGcCGugggUGGCCACguccaccuuGGCCCGu -3'
miRNA:   3'- -CAGGUCuGCuagaGCCGGUG---------CCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 119897 0.7 0.523324
Target:  5'- uGUCCucGGCGc---UGGCCACGGCCCu -3'
miRNA:   3'- -CAGGu-CUGCuagaGCCGGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 118670 1.08 0.001407
Target:  5'- gGUCCAGACGAUCUCGGCCACGGCCCGg -3'
miRNA:   3'- -CAGGUCUGCUAGAGCCGGUGCCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.