miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5592 5' -53.3 NC_001806.1 + 25514 0.66 0.971007
Target:  5'- -gGAGCGCGGGAcgcgCCGgGgaggGCugGg- -3'
miRNA:   3'- caCUUGCGCCCUa---GGUgCa---UGugCau -5'
5592 5' -53.3 NC_001806.1 + 52080 0.66 0.967989
Target:  5'- cUGGAC-CGGGGUCCcaGCG-GCACGa- -3'
miRNA:   3'- cACUUGcGCCCUAGG--UGCaUGUGCau -5'
5592 5' -53.3 NC_001806.1 + 22827 0.66 0.967989
Target:  5'- ----cCGCGGGAUCCugGagGCGCu-- -3'
miRNA:   3'- cacuuGCGCCCUAGGugCa-UGUGcau -5'
5592 5' -53.3 NC_001806.1 + 113884 0.66 0.961297
Target:  5'- gGUuAGCGCGGGGggCCACGaccccgugUACGCGg- -3'
miRNA:   3'- -CAcUUGCGCCCUa-GGUGC--------AUGUGCau -5'
5592 5' -53.3 NC_001806.1 + 70464 0.66 0.957612
Target:  5'- -aGAGCGaCGGGcgCCGCcuGUAUGCGg- -3'
miRNA:   3'- caCUUGC-GCCCuaGGUG--CAUGUGCau -5'
5592 5' -53.3 NC_001806.1 + 83825 0.67 0.953693
Target:  5'- gGUcGGCGCGGGAUCCG---GCACGc- -3'
miRNA:   3'- -CAcUUGCGCCCUAGGUgcaUGUGCau -5'
5592 5' -53.3 NC_001806.1 + 99590 0.67 0.953693
Target:  5'- -gGAACGCGGGcUCCGuCGguagagggGCGCGc- -3'
miRNA:   3'- caCUUGCGCCCuAGGU-GCa-------UGUGCau -5'
5592 5' -53.3 NC_001806.1 + 25945 0.67 0.945142
Target:  5'- cGUGGGgGCGGGG-CCGCGggaGCGg- -3'
miRNA:   3'- -CACUUgCGCCCUaGGUGCaugUGCau -5'
5592 5' -53.3 NC_001806.1 + 71755 0.67 0.945142
Target:  5'- -gGAACGCGGGGgggaUCGCG-ACAuCGUGg -3'
miRNA:   3'- caCUUGCGCCCUa---GGUGCaUGU-GCAU- -5'
5592 5' -53.3 NC_001806.1 + 42759 0.67 0.940502
Target:  5'- uUGua-GCGGGGUCC-CGUGCGCc-- -3'
miRNA:   3'- cACuugCGCCCUAGGuGCAUGUGcau -5'
5592 5' -53.3 NC_001806.1 + 41798 0.68 0.925099
Target:  5'- uUGGugGCGGaGUCCACGgccccgcaaUACGCGg- -3'
miRNA:   3'- cACUugCGCCcUAGGUGC---------AUGUGCau -5'
5592 5' -53.3 NC_001806.1 + 23861 0.68 0.919468
Target:  5'- cUGGAUGCGccaGAUCCccgaccccgaggACGUGCGCGUGg -3'
miRNA:   3'- cACUUGCGCc--CUAGG------------UGCAUGUGCAU- -5'
5592 5' -53.3 NC_001806.1 + 53140 0.68 0.919468
Target:  5'- aUGGAUGCGGGucuacgaaaacGUCUGCGUgaACACGg- -3'
miRNA:   3'- cACUUGCGCCC-----------UAGGUGCA--UGUGCau -5'
5592 5' -53.3 NC_001806.1 + 77385 0.68 0.913589
Target:  5'- -cGGGCGCGGGcgCgGCGgcCGCGc- -3'
miRNA:   3'- caCUUGCGCCCuaGgUGCauGUGCau -5'
5592 5' -53.3 NC_001806.1 + 147750 0.68 0.913589
Target:  5'- -gGGGCGCGcGGGUCC-CG-ACGCGg- -3'
miRNA:   3'- caCUUGCGC-CCUAGGuGCaUGUGCau -5'
5592 5' -53.3 NC_001806.1 + 50763 0.69 0.901094
Target:  5'- cGUGAcacuggccgcguuugACGgGGGAUUCACGgcccccgagguggGCACGUAc -3'
miRNA:   3'- -CACU---------------UGCgCCCUAGGUGCa------------UGUGCAU- -5'
5592 5' -53.3 NC_001806.1 + 147034 0.69 0.897156
Target:  5'- cGUGAGgccgccCGCGGGGacggccccggaagucUCCGCGUgGCGCGUc -3'
miRNA:   3'- -CACUU------GCGCCCU---------------AGGUGCA-UGUGCAu -5'
5592 5' -53.3 NC_001806.1 + 20819 0.69 0.880547
Target:  5'- -gGAGCGCGgcugccgacacGGAUCCACGacccgACGCGg- -3'
miRNA:   3'- caCUUGCGC-----------CCUAGGUGCa----UGUGCau -5'
5592 5' -53.3 NC_001806.1 + 75982 0.69 0.873232
Target:  5'- -gGAGCGCGgccuucGGggCCGCGgccgACACGUAc -3'
miRNA:   3'- caCUUGCGC------CCuaGGUGCa---UGUGCAU- -5'
5592 5' -53.3 NC_001806.1 + 102140 0.69 0.865693
Target:  5'- uUGAG-GCGG--UCCGCGUACACGUu -3'
miRNA:   3'- cACUUgCGCCcuAGGUGCAUGUGCAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.