Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5594 | 5' | -57.6 | NC_001806.1 | + | 19658 | 0.66 | 0.865669 |
Target: 5'- uCCACGCaacggUCgCCGCCGGuCGCCUCg--- -3' miRNA: 3'- -GGUGCGa----AG-GGCGGUU-GUGGGGgaag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 19744 | 0.66 | 0.865669 |
Target: 5'- cCCGCGUcccCCCuCCucCGCCCCCgcgUCc -3' miRNA: 3'- -GGUGCGaa-GGGcGGuuGUGGGGGa--AG- -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 90943 | 0.66 | 0.865669 |
Target: 5'- gCCGCcCUcCCCGCCGACAUuaCgUUCa -3' miRNA: 3'- -GGUGcGAaGGGCGGUUGUGggGgAAG- -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 19788 | 0.66 | 0.865669 |
Target: 5'- cCCGCGUcccCCCuCCucCGCCCCCgcgUCc -3' miRNA: 3'- -GGUGCGaa-GGGcGGuuGUGGGGGa--AG- -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 61407 | 0.66 | 0.861193 |
Target: 5'- uCCGCGCUgaaucgcacguaguuUUcgauggCCGCCAGCGCCgCCg-- -3' miRNA: 3'- -GGUGCGA---------------AG------GGCGGUUGUGGgGGaag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 293 | 0.66 | 0.858169 |
Target: 5'- cCCcCGC-UCCCGCgGcccCGCCCCCc-- -3' miRNA: 3'- -GGuGCGaAGGGCGgUu--GUGGGGGaag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 152003 | 0.66 | 0.858169 |
Target: 5'- cCCcCGC-UCCCGCgGcccCGCCCCCc-- -3' miRNA: 3'- -GGuGCGaAGGGCGgUu--GUGGGGGaag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 146637 | 0.66 | 0.858169 |
Target: 5'- cCCuCGU--CCCggGUCGACGCCCCCUg- -3' miRNA: 3'- -GGuGCGaaGGG--CGGUUGUGGGGGAag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 79973 | 0.66 | 0.858169 |
Target: 5'- cCCcCGCUaaccucgggUCCCgcGCCAACcCCCCCc-- -3' miRNA: 3'- -GGuGCGA---------AGGG--CGGUUGuGGGGGaag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 72240 | 0.66 | 0.858169 |
Target: 5'- gCACGgcCUUCCgGagGGCACCCCCg-- -3' miRNA: 3'- gGUGC--GAAGGgCggUUGUGGGGGaag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 4336 | 0.66 | 0.858169 |
Target: 5'- gCCGCGCgggCCCGgCGGCGCUcgaugcggCCCg-- -3' miRNA: 3'- -GGUGCGaa-GGGCgGUUGUGG--------GGGaag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 122729 | 0.66 | 0.85047 |
Target: 5'- aCCACGU---CCGCCGGCGCgcaCUCCUUa -3' miRNA: 3'- -GGUGCGaagGGCGGUUGUG---GGGGAAg -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 120004 | 0.66 | 0.85047 |
Target: 5'- cCCGCGCUcgaggugCCCcugcGCCAcccGCGCCCCg--- -3' miRNA: 3'- -GGUGCGAa------GGG----CGGU---UGUGGGGgaag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 30162 | 0.66 | 0.85047 |
Target: 5'- gCCAgGCUccgcccCCCGCCccgGGC-CCCCCgcgUCc -3' miRNA: 3'- -GGUgCGAa-----GGGCGG---UUGuGGGGGa--AG- -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 23421 | 0.66 | 0.85047 |
Target: 5'- nCCACGCc-CCCGgggcCCGAgccCGCCCCCg-- -3' miRNA: 3'- -GGUGCGaaGGGC----GGUU---GUGGGGGaag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 82529 | 0.66 | 0.85047 |
Target: 5'- gCuuGCccagUCCCGCCAugGCgCCCg-- -3' miRNA: 3'- gGugCGa---AGGGCGGUugUGgGGGaag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 53423 | 0.66 | 0.84969 |
Target: 5'- cCCGUGCUg-CCGUCGcuagaccACGCCCCUUUCc -3' miRNA: 3'- -GGUGCGAagGGCGGU-------UGUGGGGGAAG- -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 146882 | 0.66 | 0.845758 |
Target: 5'- gCCAUGUUUCCCGucugguccaccaggaCCAcguACGCCCCg--- -3' miRNA: 3'- -GGUGCGAAGGGC---------------GGU---UGUGGGGgaag -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 1573 | 0.66 | 0.842579 |
Target: 5'- gCGCGCa--CCGCCucGCGCCCCag-Cg -3' miRNA: 3'- gGUGCGaagGGCGGu-UGUGGGGgaaG- -5' |
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5594 | 5' | -57.6 | NC_001806.1 | + | 102972 | 0.66 | 0.842579 |
Target: 5'- cCCGuCGCccccaCCCGCCGGCucAUCCCCg-- -3' miRNA: 3'- -GGU-GCGaa---GGGCGGUUG--UGGGGGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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