miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 19788 0.66 0.865669
Target:  5'- cCCGCGUcccCCCuCCucCGCCCCCgcgUCc -3'
miRNA:   3'- -GGUGCGaa-GGGcGGuuGUGGGGGa--AG- -5'
5594 5' -57.6 NC_001806.1 + 19744 0.66 0.865669
Target:  5'- cCCGCGUcccCCCuCCucCGCCCCCgcgUCc -3'
miRNA:   3'- -GGUGCGaa-GGGcGGuuGUGGGGGa--AG- -5'
5594 5' -57.6 NC_001806.1 + 19658 0.66 0.865669
Target:  5'- uCCACGCaacggUCgCCGCCGGuCGCCUCg--- -3'
miRNA:   3'- -GGUGCGa----AG-GGCGGUU-GUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 90943 0.66 0.865669
Target:  5'- gCCGCcCUcCCCGCCGACAUuaCgUUCa -3'
miRNA:   3'- -GGUGcGAaGGGCGGUUGUGggGgAAG- -5'
5594 5' -57.6 NC_001806.1 + 61407 0.66 0.861193
Target:  5'- uCCGCGCUgaaucgcacguaguuUUcgauggCCGCCAGCGCCgCCg-- -3'
miRNA:   3'- -GGUGCGA---------------AG------GGCGGUUGUGGgGGaag -5'
5594 5' -57.6 NC_001806.1 + 152003 0.66 0.858169
Target:  5'- cCCcCGC-UCCCGCgGcccCGCCCCCc-- -3'
miRNA:   3'- -GGuGCGaAGGGCGgUu--GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 4336 0.66 0.858169
Target:  5'- gCCGCGCgggCCCGgCGGCGCUcgaugcggCCCg-- -3'
miRNA:   3'- -GGUGCGaa-GGGCgGUUGUGG--------GGGaag -5'
5594 5' -57.6 NC_001806.1 + 72240 0.66 0.858169
Target:  5'- gCACGgcCUUCCgGagGGCACCCCCg-- -3'
miRNA:   3'- gGUGC--GAAGGgCggUUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 293 0.66 0.858169
Target:  5'- cCCcCGC-UCCCGCgGcccCGCCCCCc-- -3'
miRNA:   3'- -GGuGCGaAGGGCGgUu--GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 79973 0.66 0.858169
Target:  5'- cCCcCGCUaaccucgggUCCCgcGCCAACcCCCCCc-- -3'
miRNA:   3'- -GGuGCGA---------AGGG--CGGUUGuGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 146637 0.66 0.858169
Target:  5'- cCCuCGU--CCCggGUCGACGCCCCCUg- -3'
miRNA:   3'- -GGuGCGaaGGG--CGGUUGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 120004 0.66 0.85047
Target:  5'- cCCGCGCUcgaggugCCCcugcGCCAcccGCGCCCCg--- -3'
miRNA:   3'- -GGUGCGAa------GGG----CGGU---UGUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 23421 0.66 0.85047
Target:  5'- nCCACGCc-CCCGgggcCCGAgccCGCCCCCg-- -3'
miRNA:   3'- -GGUGCGaaGGGC----GGUU---GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 82529 0.66 0.85047
Target:  5'- gCuuGCccagUCCCGCCAugGCgCCCg-- -3'
miRNA:   3'- gGugCGa---AGGGCGGUugUGgGGGaag -5'
5594 5' -57.6 NC_001806.1 + 122729 0.66 0.85047
Target:  5'- aCCACGU---CCGCCGGCGCgcaCUCCUUa -3'
miRNA:   3'- -GGUGCGaagGGCGGUUGUG---GGGGAAg -5'
5594 5' -57.6 NC_001806.1 + 30162 0.66 0.85047
Target:  5'- gCCAgGCUccgcccCCCGCCccgGGC-CCCCCgcgUCc -3'
miRNA:   3'- -GGUgCGAa-----GGGCGG---UUGuGGGGGa--AG- -5'
5594 5' -57.6 NC_001806.1 + 53423 0.66 0.84969
Target:  5'- cCCGUGCUg-CCGUCGcuagaccACGCCCCUUUCc -3'
miRNA:   3'- -GGUGCGAagGGCGGU-------UGUGGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 146882 0.66 0.845758
Target:  5'- gCCAUGUUUCCCGucugguccaccaggaCCAcguACGCCCCg--- -3'
miRNA:   3'- -GGUGCGAAGGGC---------------GGU---UGUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 102972 0.66 0.842579
Target:  5'- cCCGuCGCccccaCCCGCCGGCucAUCCCCg-- -3'
miRNA:   3'- -GGU-GCGaa---GGGCGGUUG--UGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 114418 0.66 0.842579
Target:  5'- gCACGCcggaaUCCUGCUgAugGCCCCCc-- -3'
miRNA:   3'- gGUGCGa----AGGGCGG-UugUGGGGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.