miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 106950 0.66 0.971266
Target:  5'- --uCGUGaacGCCGcccACGCA-AACGGCGCg -3'
miRNA:   3'- guuGUAC---CGGCu--UGCGUgUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 107350 0.66 0.971266
Target:  5'- cCGGCAgccguucuUGGCUG-GCGUccccuCGGCGGUGCa -3'
miRNA:   3'- -GUUGU--------ACCGGCuUGCGu----GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 69111 0.66 0.971266
Target:  5'- uCGGCcuGUGcGCCcccggGGACGC-UAAUGGCGCg -3'
miRNA:   3'- -GUUG--UAC-CGG-----CUUGCGuGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 57401 0.66 0.971266
Target:  5'- gAGCAucccgcgccuUGGCCguGAugGCACG-CGGgGUg -3'
miRNA:   3'- gUUGU----------ACCGG--CUugCGUGUuGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 76382 0.66 0.971266
Target:  5'- gGACGc-GCUGGugGCGUGCGugGCGGCGCu -3'
miRNA:   3'- gUUGUacCGGCU--UGCGUGU--UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 12820 0.66 0.971266
Target:  5'- uCGGgGUGGCCGGgggaugguaAgGCGucGCGGCGUc -3'
miRNA:   3'- -GUUgUACCGGCU---------UgCGUguUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 5659 0.66 0.968283
Target:  5'- --cCAUGGgCGGG-GCGCGAgGGCGg -3'
miRNA:   3'- guuGUACCgGCUUgCGUGUUgCCGCg -5'
5602 3' -53.6 NC_001806.1 + 143119 0.66 0.968283
Target:  5'- gGGCGUGGCUgccgggagGGGcCGCGgAugGGCGg -3'
miRNA:   3'- gUUGUACCGG--------CUU-GCGUgUugCCGCg -5'
5602 3' -53.6 NC_001806.1 + 29928 0.66 0.968283
Target:  5'- aCAGCAgcGGCgGGGCGgcucccgccaguCGCGagccGCGGCGCc -3'
miRNA:   3'- -GUUGUa-CCGgCUUGC------------GUGU----UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 86833 0.66 0.967973
Target:  5'- gCAGCAUcucgcGGCCGAugGUcgucaccgucgcgGCAAC-GUGCa -3'
miRNA:   3'- -GUUGUA-----CCGGCUugCG-------------UGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 21504 0.66 0.96639
Target:  5'- gCGACcgGGCCccggcccggggccgcGAACGggaggcccCGCuacGCGGCGCg -3'
miRNA:   3'- -GUUGuaCCGG---------------CUUGC--------GUGu--UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 96370 0.66 0.965085
Target:  5'- --cCAUGcGCCaGGGCGCccccgcGCGGgGGCGCc -3'
miRNA:   3'- guuGUAC-CGG-CUUGCG------UGUUgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 24629 0.66 0.965085
Target:  5'- -cGCuggGGCCuGGGCGCGCcgcuGCGGCcCg -3'
miRNA:   3'- guUGua-CCGG-CUUGCGUGu---UGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 14133 0.66 0.965085
Target:  5'- gGACAUGGUUugGGGgGCGCAcCGGUGa -3'
miRNA:   3'- gUUGUACCGG--CUUgCGUGUuGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 24951 0.66 0.965085
Target:  5'- aGGCGccUGGgaCGAagACG-ACGGCGGCGCg -3'
miRNA:   3'- gUUGU--ACCg-GCU--UGCgUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 147633 0.66 0.965085
Target:  5'- gCGACuggGGCacacGGCGCGCGuccGCGGgGCg -3'
miRNA:   3'- -GUUGua-CCGgc--UUGCGUGU---UGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 86795 0.66 0.965085
Target:  5'- -----aGGCCGcccAGCGCGCGuggacguacucGCGGuCGCg -3'
miRNA:   3'- guuguaCCGGC---UUGCGUGU-----------UGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 2837 0.66 0.965085
Target:  5'- gGGCGUGGagGGGgGCGCG--GGCGCg -3'
miRNA:   3'- gUUGUACCggCUUgCGUGUugCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 144205 0.66 0.965085
Target:  5'- gCAGCcgccGCCGAcacCGCAgAGcCGGCGCg -3'
miRNA:   3'- -GUUGuac-CGGCUu--GCGUgUU-GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 141707 0.66 0.964754
Target:  5'- ----cUGGCCGAuguaaccACGCGCAccucgucgGgGGUGCa -3'
miRNA:   3'- guuguACCGGCU-------UGCGUGU--------UgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.