miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5605 3' -56.9 NC_001806.1 + 125334 0.66 0.889085
Target:  5'- gGCCCCGA-CAGcccccccaAGCGCC-CCcGCc -3'
miRNA:   3'- gCGGGGCUaGUUug------UCGCGGaGGaCG- -5'
5605 3' -56.9 NC_001806.1 + 118525 0.66 0.889085
Target:  5'- aCGCgCCGcgCAuaAGCAcgcaCGCCUCCguugGCg -3'
miRNA:   3'- -GCGgGGCuaGU--UUGUc---GCGGAGGa---CG- -5'
5605 3' -56.9 NC_001806.1 + 43778 0.66 0.889085
Target:  5'- cCGCCCCcggaGGUUAcGCuGGCGCCUgCcGCc -3'
miRNA:   3'- -GCGGGG----CUAGUuUG-UCGCGGAgGaCG- -5'
5605 3' -56.9 NC_001806.1 + 38698 0.66 0.889085
Target:  5'- cCGCCCCc--CGGGCGGgGCC-CCcGCc -3'
miRNA:   3'- -GCGGGGcuaGUUUGUCgCGGaGGaCG- -5'
5605 3' -56.9 NC_001806.1 + 118915 0.66 0.882236
Target:  5'- gGCCCCcGUCGugcCGGCacacccugGCCUCCUuccGCg -3'
miRNA:   3'- gCGGGGcUAGUuu-GUCG--------CGGAGGA---CG- -5'
5605 3' -56.9 NC_001806.1 + 78817 0.66 0.882236
Target:  5'- uCGUCCgacauCGAgacgUggGCcGuCGCCUCCUGCa -3'
miRNA:   3'- -GCGGG-----GCUa---GuuUGuC-GCGGAGGACG- -5'
5605 3' -56.9 NC_001806.1 + 94412 0.66 0.875167
Target:  5'- cCGUCCauAUgGAGCuGUGUUUCCUGCa -3'
miRNA:   3'- -GCGGGgcUAgUUUGuCGCGGAGGACG- -5'
5605 3' -56.9 NC_001806.1 + 51263 0.66 0.875167
Target:  5'- aGCgCCGGaCGcGCGGCGCgagCUcCCUGCg -3'
miRNA:   3'- gCGgGGCUaGUuUGUCGCG---GA-GGACG- -5'
5605 3' -56.9 NC_001806.1 + 135139 0.66 0.875167
Target:  5'- aCGUCCgCGA-CGAACAGgGCCgcgaugUCUGUc -3'
miRNA:   3'- -GCGGG-GCUaGUUUGUCgCGGa-----GGACG- -5'
5605 3' -56.9 NC_001806.1 + 40787 0.66 0.875167
Target:  5'- -aUCUCGGUCcAACAGCaCCgCCUGCu -3'
miRNA:   3'- gcGGGGCUAGuUUGUCGcGGaGGACG- -5'
5605 3' -56.9 NC_001806.1 + 27860 0.66 0.875167
Target:  5'- cCGCCCCG--CGGugGGCcuGCCUCCc-- -3'
miRNA:   3'- -GCGGGGCuaGUUugUCG--CGGAGGacg -5'
5605 3' -56.9 NC_001806.1 + 65094 0.66 0.872279
Target:  5'- gGCCCCGccggacacGUCcgaggaggcguguGACAGCGUCUCCg-- -3'
miRNA:   3'- gCGGGGC--------UAGu------------UUGUCGCGGAGGacg -5'
5605 3' -56.9 NC_001806.1 + 68167 0.66 0.867884
Target:  5'- cCGCCCuCGGaCGGaccuauGCAGCGCCUauugGCg -3'
miRNA:   3'- -GCGGG-GCUaGUU------UGUCGCGGAgga-CG- -5'
5605 3' -56.9 NC_001806.1 + 23371 0.66 0.867884
Target:  5'- aCGcCCCCGGcUCGGACGcccGCGCCccccUCCccGCg -3'
miRNA:   3'- -GC-GGGGCU-AGUUUGU---CGCGG----AGGa-CG- -5'
5605 3' -56.9 NC_001806.1 + 2079 0.66 0.867884
Target:  5'- aGCCgCCGGUCGc-CGGCGCUggCgaGCa -3'
miRNA:   3'- gCGG-GGCUAGUuuGUCGCGGa-GgaCG- -5'
5605 3' -56.9 NC_001806.1 + 128793 0.66 0.867144
Target:  5'- aGCCCCGugacgCAGaccGCAGagaccacaaacguCGCCaCCUGCa -3'
miRNA:   3'- gCGGGGCua---GUU---UGUC-------------GCGGaGGACG- -5'
5605 3' -56.9 NC_001806.1 + 134905 0.66 0.860392
Target:  5'- cCGCCUCGAcCAGGCuGCGguccCCggcgauggCCUGCu -3'
miRNA:   3'- -GCGGGGCUaGUUUGuCGC----GGa-------GGACG- -5'
5605 3' -56.9 NC_001806.1 + 75152 0.66 0.852696
Target:  5'- cCGUCUCGAacgccaUCAAcgccgGCAGCGCCgCCgucGCa -3'
miRNA:   3'- -GCGGGGCU------AGUU-----UGUCGCGGaGGa--CG- -5'
5605 3' -56.9 NC_001806.1 + 86334 0.66 0.852696
Target:  5'- gGCCCCGAaCGccuGCAGUcCCUCggGCa -3'
miRNA:   3'- gCGGGGCUaGUu--UGUCGcGGAGgaCG- -5'
5605 3' -56.9 NC_001806.1 + 46429 0.66 0.852696
Target:  5'- gCGCCgCGGUCG---GGCGCCUggcggCCaUGCa -3'
miRNA:   3'- -GCGGgGCUAGUuugUCGCGGA-----GG-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.