miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5605 5' -55.3 NC_001806.1 + 97142 0.66 0.929391
Target:  5'- cGGGUGGAGGcguucCACCGGuacgGGaCGACGg -3'
miRNA:   3'- uUUCACCUCCu----GUGGCU----UCgGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 41106 0.66 0.929391
Target:  5'- ----cGGAacccacGGACGCCGGgccgGGCCGACa- -3'
miRNA:   3'- uuucaCCU------CCUGUGGCU----UCGGCUGca -5'
5605 5' -55.3 NC_001806.1 + 83214 0.66 0.929391
Target:  5'- -----cGAGGACGUCGccGCCGACGUg -3'
miRNA:   3'- uuucacCUCCUGUGGCuuCGGCUGCA- -5'
5605 5' -55.3 NC_001806.1 + 148097 0.66 0.924001
Target:  5'- ----aGGGGGGCGCUGuccGAGCCG-CGg -3'
miRNA:   3'- uuucaCCUCCUGUGGC---UUCGGCuGCa -5'
5605 5' -55.3 NC_001806.1 + 59134 0.66 0.924001
Target:  5'- -cGGUGGugAGGGCAgCCG-GGCCGGgGUc -3'
miRNA:   3'- uuUCACC--UCCUGU-GGCuUCGGCUgCA- -5'
5605 5' -55.3 NC_001806.1 + 107815 0.66 0.923449
Target:  5'- ----cGGGGGAucggcuacaagcuCACCGgcGUCGACGUc -3'
miRNA:   3'- uuucaCCUCCU-------------GUGGCuuCGGCUGCA- -5'
5605 5' -55.3 NC_001806.1 + 29201 0.66 0.918367
Target:  5'- gAGAGgacgGGGGGAgCGaCGAGGgCGACGUg -3'
miRNA:   3'- -UUUCa---CCUCCU-GUgGCUUCgGCUGCA- -5'
5605 5' -55.3 NC_001806.1 + 119719 0.66 0.918367
Target:  5'- cGAGUGGuuGGAuCGCgGAugggaagcccuGGCCGGCGg -3'
miRNA:   3'- uUUCACCu-CCU-GUGgCU-----------UCGGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 4420 0.66 0.912489
Target:  5'- gAGAGgGGGGGugGCCcgggcGggGgCGGCGUc -3'
miRNA:   3'- -UUUCaCCUCCugUGG-----CuuCgGCUGCA- -5'
5605 5' -55.3 NC_001806.1 + 133215 0.66 0.910678
Target:  5'- cGGGGUGaucGAGGACGcCCGGcgggccaucgagacGGCCGugGg -3'
miRNA:   3'- -UUUCAC---CUCCUGU-GGCU--------------UCGGCugCa -5'
5605 5' -55.3 NC_001806.1 + 23051 0.66 0.906368
Target:  5'- --cGUGGccGGcGGCAgCGAGGCCGcCGUg -3'
miRNA:   3'- uuuCACC--UC-CUGUgGCUUCGGCuGCA- -5'
5605 5' -55.3 NC_001806.1 + 73526 0.66 0.906368
Target:  5'- --cGUGGGGGACuuucugGCCuccacgcgccuGAgccuGGCCGACGUg -3'
miRNA:   3'- uuuCACCUCCUG------UGG-----------CU----UCGGCUGCA- -5'
5605 5' -55.3 NC_001806.1 + 33985 0.66 0.900007
Target:  5'- ----cGGGGGuCGCCGggGCaggGGCGg -3'
miRNA:   3'- uuucaCCUCCuGUGGCuuCGg--CUGCa -5'
5605 5' -55.3 NC_001806.1 + 26833 0.67 0.886576
Target:  5'- cGGG-GaGGGGGCGCCGGAGCCccccGCGa -3'
miRNA:   3'- uUUCaC-CUCCUGUGGCUUCGGc---UGCa -5'
5605 5' -55.3 NC_001806.1 + 29023 0.67 0.886576
Target:  5'- gGGGGgcgGGGGGACGCCGAccaccauGaCGACGa -3'
miRNA:   3'- -UUUCa--CCUCCUGUGGCUu------CgGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 6418 0.67 0.879513
Target:  5'- gGAGG-GGGGGACGCgGggGUgGAgGa -3'
miRNA:   3'- -UUUCaCCUCCUGUGgCuuCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 143358 0.67 0.879513
Target:  5'- aAAAG-GGAGGG-ACgGggGCCGGCa- -3'
miRNA:   3'- -UUUCaCCUCCUgUGgCuuCGGCUGca -5'
5605 5' -55.3 NC_001806.1 + 151542 0.67 0.879513
Target:  5'- --cGUGGGcccGGGCgGCCGggGgCGGCGg -3'
miRNA:   3'- uuuCACCU---CCUG-UGGCuuCgGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 93910 0.67 0.872225
Target:  5'- cGAAGaGGGGGACcCCGggGCUcagccaGACGc -3'
miRNA:   3'- -UUUCaCCUCCUGuGGCuuCGG------CUGCa -5'
5605 5' -55.3 NC_001806.1 + 76211 0.67 0.867746
Target:  5'- --cGUGGAuauccgcgaucgccuGGACGCCcuccGGGCCGACGc -3'
miRNA:   3'- uuuCACCU---------------CCUGUGGc---UUCGGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.