Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5606 | 3' | -62.4 | NC_001806.1 | + | 126286 | 0.66 | 0.628764 |
Target: 5'- gGACAuucACGGCUaCCUGGCC-CCAGu-- -3' miRNA: 3'- -CUGU---UGCCGGcGGACCGGuGGUCcca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 2702 | 0.66 | 0.628764 |
Target: 5'- nGGCuGCcGCCGCCa-GCCGcCCAGGGg -3' miRNA: 3'- -CUGuUGcCGGCGGacCGGU-GGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 67160 | 0.66 | 0.628764 |
Target: 5'- --gGGCGGUCGCCuccaucagcUGGCC-CCAGGc- -3' miRNA: 3'- cugUUGCCGGCGG---------ACCGGuGGUCCca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 121536 | 0.66 | 0.625794 |
Target: 5'- --gGAUGGCU-CCUGGCCAggaucaccaaccacCCGGGGg -3' miRNA: 3'- cugUUGCCGGcGGACCGGU--------------GGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 130813 | 0.66 | 0.622825 |
Target: 5'- aGCAccAUGGCCGCgcgccugcauugggaCUcGGCgGCCGGGGg -3' miRNA: 3'- cUGU--UGCCGGCG---------------GA-CCGgUGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 29099 | 0.66 | 0.618867 |
Target: 5'- aGACGG-GGCUGCUggGGCCG-CAGGGc -3' miRNA: 3'- -CUGUUgCCGGCGGa-CCGGUgGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 1612 | 0.66 | 0.618867 |
Target: 5'- cGCAGCGGCgCGCCcaGGCC-CCAGc-- -3' miRNA: 3'- cUGUUGCCG-GCGGa-CCGGuGGUCcca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 98009 | 0.66 | 0.618867 |
Target: 5'- -cCAACGccaUCGCCUcGGCCACCGuGGGc -3' miRNA: 3'- cuGUUGCc--GGCGGA-CCGGUGGU-CCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 133285 | 0.66 | 0.618867 |
Target: 5'- cGGCuGCGGCacccacugUGCCUGGCCcuCgAGGGc -3' miRNA: 3'- -CUGuUGCCG--------GCGGACCGGu-GgUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 147662 | 0.66 | 0.618867 |
Target: 5'- gGGCgGGCGGCCGgCUccGCC-CCGGGGg -3' miRNA: 3'- -CUG-UUGCCGGCgGAc-CGGuGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 23777 | 0.66 | 0.6159 |
Target: 5'- cGAUAACccccacccccacggGGCCGCCgggGGCCGCCucuuuGGc- -3' miRNA: 3'- -CUGUUG--------------CCGGCGGa--CCGGUGGu----CCca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 115234 | 0.66 | 0.60898 |
Target: 5'- cGGgGACGcGCCGCCgggGGCguuUACgCGGGGg -3' miRNA: 3'- -CUgUUGC-CGGCGGa--CCG---GUG-GUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 26951 | 0.66 | 0.60898 |
Target: 5'- gGGCcuCGGCCGCCcgccUGGCgCGCCGcGGc -3' miRNA: 3'- -CUGuuGCCGGCGG----ACCG-GUGGUcCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 146870 | 0.66 | 0.607992 |
Target: 5'- cGCAGcCGGgucgccauguuucCCGUCUGGuCCACCAGGa- -3' miRNA: 3'- cUGUU-GCC-------------GGCGGACC-GGUGGUCCca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 62303 | 0.66 | 0.599109 |
Target: 5'- cGACAgugGCGGCgGgCCUGGCgCGgaGGGGg -3' miRNA: 3'- -CUGU---UGCCGgC-GGACCG-GUggUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 93568 | 0.66 | 0.599109 |
Target: 5'- cGACAACGcgacGCCGUUcGGCgGcCCGGGGg -3' miRNA: 3'- -CUGUUGC----CGGCGGaCCGgU-GGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 21925 | 0.66 | 0.599109 |
Target: 5'- cGCGGCGGUgGCC-GGCCgcgacGCCAcGGGc -3' miRNA: 3'- cUGUUGCCGgCGGaCCGG-----UGGU-CCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 33338 | 0.66 | 0.589261 |
Target: 5'- cGACGccccuUGGCCGCCccGGCUGCaGGGGg -3' miRNA: 3'- -CUGUu----GCCGGCGGa-CCGGUGgUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 41723 | 0.66 | 0.589261 |
Target: 5'- gGACuGGCGGgCGCaaacgcgGGCCACCcgcGGGGg -3' miRNA: 3'- -CUG-UUGCCgGCGga-----CCGGUGG---UCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 55506 | 0.66 | 0.579442 |
Target: 5'- cGCGGCGGUCGCaccacacgGGCC-CgGGGGg -3' miRNA: 3'- cUGUUGCCGGCGga------CCGGuGgUCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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