miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 126286 0.66 0.628764
Target:  5'- gGACAuucACGGCUaCCUGGCC-CCAGu-- -3'
miRNA:   3'- -CUGU---UGCCGGcGGACCGGuGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 2702 0.66 0.628764
Target:  5'- nGGCuGCcGCCGCCa-GCCGcCCAGGGg -3'
miRNA:   3'- -CUGuUGcCGGCGGacCGGU-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 67160 0.66 0.628764
Target:  5'- --gGGCGGUCGCCuccaucagcUGGCC-CCAGGc- -3'
miRNA:   3'- cugUUGCCGGCGG---------ACCGGuGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 121536 0.66 0.625794
Target:  5'- --gGAUGGCU-CCUGGCCAggaucaccaaccacCCGGGGg -3'
miRNA:   3'- cugUUGCCGGcGGACCGGU--------------GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 130813 0.66 0.622825
Target:  5'- aGCAccAUGGCCGCgcgccugcauugggaCUcGGCgGCCGGGGg -3'
miRNA:   3'- cUGU--UGCCGGCG---------------GA-CCGgUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 147662 0.66 0.618867
Target:  5'- gGGCgGGCGGCCGgCUccGCC-CCGGGGg -3'
miRNA:   3'- -CUG-UUGCCGGCgGAc-CGGuGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 1612 0.66 0.618867
Target:  5'- cGCAGCGGCgCGCCcaGGCC-CCAGc-- -3'
miRNA:   3'- cUGUUGCCG-GCGGa-CCGGuGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 98009 0.66 0.618867
Target:  5'- -cCAACGccaUCGCCUcGGCCACCGuGGGc -3'
miRNA:   3'- cuGUUGCc--GGCGGA-CCGGUGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 133285 0.66 0.618867
Target:  5'- cGGCuGCGGCacccacugUGCCUGGCCcuCgAGGGc -3'
miRNA:   3'- -CUGuUGCCG--------GCGGACCGGu-GgUCCCa -5'
5606 3' -62.4 NC_001806.1 + 29099 0.66 0.618867
Target:  5'- aGACGG-GGCUGCUggGGCCG-CAGGGc -3'
miRNA:   3'- -CUGUUgCCGGCGGa-CCGGUgGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 23777 0.66 0.6159
Target:  5'- cGAUAACccccacccccacggGGCCGCCgggGGCCGCCucuuuGGc- -3'
miRNA:   3'- -CUGUUG--------------CCGGCGGa--CCGGUGGu----CCca -5'
5606 3' -62.4 NC_001806.1 + 26951 0.66 0.60898
Target:  5'- gGGCcuCGGCCGCCcgccUGGCgCGCCGcGGc -3'
miRNA:   3'- -CUGuuGCCGGCGG----ACCG-GUGGUcCCa -5'
5606 3' -62.4 NC_001806.1 + 115234 0.66 0.60898
Target:  5'- cGGgGACGcGCCGCCgggGGCguuUACgCGGGGg -3'
miRNA:   3'- -CUgUUGC-CGGCGGa--CCG---GUG-GUCCCa -5'
5606 3' -62.4 NC_001806.1 + 146870 0.66 0.607992
Target:  5'- cGCAGcCGGgucgccauguuucCCGUCUGGuCCACCAGGa- -3'
miRNA:   3'- cUGUU-GCC-------------GGCGGACC-GGUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 21925 0.66 0.599109
Target:  5'- cGCGGCGGUgGCC-GGCCgcgacGCCAcGGGc -3'
miRNA:   3'- cUGUUGCCGgCGGaCCGG-----UGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 93568 0.66 0.599109
Target:  5'- cGACAACGcgacGCCGUUcGGCgGcCCGGGGg -3'
miRNA:   3'- -CUGUUGC----CGGCGGaCCGgU-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 62303 0.66 0.599109
Target:  5'- cGACAgugGCGGCgGgCCUGGCgCGgaGGGGg -3'
miRNA:   3'- -CUGU---UGCCGgC-GGACCG-GUggUCCCa -5'
5606 3' -62.4 NC_001806.1 + 41723 0.66 0.589261
Target:  5'- gGACuGGCGGgCGCaaacgcgGGCCACCcgcGGGGg -3'
miRNA:   3'- -CUG-UUGCCgGCGga-----CCGGUGG---UCCCa -5'
5606 3' -62.4 NC_001806.1 + 33338 0.66 0.589261
Target:  5'- cGACGccccuUGGCCGCCccGGCUGCaGGGGg -3'
miRNA:   3'- -CUGUu----GCCGGCGGa-CCGGUGgUCCCa -5'
5606 3' -62.4 NC_001806.1 + 55506 0.66 0.579442
Target:  5'- cGCGGCGGUCGCaccacacgGGCC-CgGGGGg -3'
miRNA:   3'- cUGUUGCCGGCGga------CCGGuGgUCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.