miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 5' -56.2 NC_001806.1 + 79115 0.66 0.917135
Target:  5'- gGACCCcuuccUCGCgCGAGCUAuccucGGGCGGc -3'
miRNA:   3'- gCUGGGacc--AGCG-GCUCGAU-----UUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 75259 0.66 0.917135
Target:  5'- aCGGCCCUGGgCGCgGccGCc--AGCGAc -3'
miRNA:   3'- -GCUGGGACCaGCGgCu-CGauuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 9188 0.66 0.911303
Target:  5'- -aGCCCgggGGUCG-CGGGUgu-GGCGAg -3'
miRNA:   3'- gcUGGGa--CCAGCgGCUCGauuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 108905 0.66 0.911303
Target:  5'- uCGGCCaagacugGGUCGUCGGGCc-GAGgGAc -3'
miRNA:   3'- -GCUGGga-----CCAGCGGCUCGauUUCgCU- -5'
5606 5' -56.2 NC_001806.1 + 120107 0.66 0.905854
Target:  5'- gGGCCCUGGgccaggccauccggGCCGcGCUucAGGGCGGc -3'
miRNA:   3'- gCUGGGACCag------------CGGCuCGA--UUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 46390 0.66 0.905236
Target:  5'- gGACCCcccgGGUgGCCG-GCUuuaacAAGCGc -3'
miRNA:   3'- gCUGGGa---CCAgCGGCuCGAu----UUCGCu -5'
5606 5' -56.2 NC_001806.1 + 93473 0.66 0.905236
Target:  5'- gCGGCCCUGGagguggCGCaCGAgGCcGAGGCc- -3'
miRNA:   3'- -GCUGGGACCa-----GCG-GCU-CGaUUUCGcu -5'
5606 5' -56.2 NC_001806.1 + 10681 0.66 0.905236
Target:  5'- aGACCCccGGUCGCagaugGGGCcgggGGGGCGu -3'
miRNA:   3'- gCUGGGa-CCAGCGg----CUCGa---UUUCGCu -5'
5606 5' -56.2 NC_001806.1 + 77104 0.66 0.905236
Target:  5'- gGGCguCCUGGgCGCCaaGAGCgccGAGCGGg -3'
miRNA:   3'- gCUG--GGACCaGCGG--CUCGau-UUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 29435 0.66 0.898296
Target:  5'- aGACCCgcaUGGagGCCGAGgaGgccgucaGGGCGGg -3'
miRNA:   3'- gCUGGG---ACCagCGGCUCgaU-------UUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 63960 0.66 0.892411
Target:  5'- uGGCCCgcagGGUCGCCuuGUUuguGGUGGc -3'
miRNA:   3'- gCUGGGa---CCAGCGGcuCGAuu-UCGCU- -5'
5606 5' -56.2 NC_001806.1 + 50686 0.66 0.892411
Target:  5'- gCGGCCacgcgcgccauuCUGGcCGCCGGGCUcguccugcAGCGGc -3'
miRNA:   3'- -GCUGG------------GACCaGCGGCUCGAuu------UCGCU- -5'
5606 5' -56.2 NC_001806.1 + 22057 0.66 0.892411
Target:  5'- uGGCCC-GG-CGCCGGGCccccgcccccGGGGCGGg -3'
miRNA:   3'- gCUGGGaCCaGCGGCUCGa---------UUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 44397 0.66 0.892411
Target:  5'- aCGACCa-GGagGCCGcgGGCguuGAGCGAc -3'
miRNA:   3'- -GCUGGgaCCagCGGC--UCGau-UUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 76627 0.66 0.892411
Target:  5'- aGACCCugcugaaggUGGUCGCCGuccc--GGCGAc -3'
miRNA:   3'- gCUGGG---------ACCAGCGGCucgauuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 6071 0.66 0.885657
Target:  5'- cCGGCCCcGGgggCGggcCCGGGCggcggGGGGCGGg -3'
miRNA:   3'- -GCUGGGaCCa--GC---GGCUCGa----UUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 30410 0.66 0.885657
Target:  5'- gCGGCUCggGGggGCCGGGCguggAGGGUGGg -3'
miRNA:   3'- -GCUGGGa-CCagCGGCUCGa---UUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 89184 0.66 0.883587
Target:  5'- uGGCCC-GGUCGgcuucuguugcgucCCGA-CUGGGGCGAg -3'
miRNA:   3'- gCUGGGaCCAGC--------------GGCUcGAUUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 74073 0.67 0.878681
Target:  5'- gGACCCaGGccCGUCGGGCgaucgAGGGCGc -3'
miRNA:   3'- gCUGGGaCCa-GCGGCUCGa----UUUCGCu -5'
5606 5' -56.2 NC_001806.1 + 4279 0.67 0.878681
Target:  5'- uCGACCCgccggGGcUGCCcGGCcgUGAAGCGGc -3'
miRNA:   3'- -GCUGGGa----CCaGCGGcUCG--AUUUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.