miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5607 3' -61.5 NC_001806.1 + 46213 0.66 0.689732
Target:  5'- aGGCCCCc--GCgGC-CCCGGCgGCGGa -3'
miRNA:   3'- -CUGGGGuacCGgCGaGGGUUGgCGCU- -5'
5607 3' -61.5 NC_001806.1 + 151768 0.66 0.689732
Target:  5'- gGGgCCCGuuuucggcgucUGGCCGCUCCUccccCCGCu- -3'
miRNA:   3'- -CUgGGGU-----------ACCGGCGAGGGuu--GGCGcu -5'
5607 3' -61.5 NC_001806.1 + 74035 0.66 0.689732
Target:  5'- gGGCCCCGaGGCCGUUCagguuCGGCUG-GAg -3'
miRNA:   3'- -CUGGGGUaCCGGCGAGg----GUUGGCgCU- -5'
5607 3' -61.5 NC_001806.1 + 30220 0.66 0.689732
Target:  5'- cGCCCCcgcgcGGCCGUggcCCCGugCGUGc -3'
miRNA:   3'- cUGGGGua---CCGGCGa--GGGUugGCGCu -5'
5607 3' -61.5 NC_001806.1 + 145979 0.66 0.689732
Target:  5'- cGACCCCcuuuUGGgCGC-CCCGucCCGCc- -3'
miRNA:   3'- -CUGGGGu---ACCgGCGaGGGUu-GGCGcu -5'
5607 3' -61.5 NC_001806.1 + 79007 0.66 0.689732
Target:  5'- gGACCCCcccGGCCcC-CCCGACgUGCGGu -3'
miRNA:   3'- -CUGGGGua-CCGGcGaGGGUUG-GCGCU- -5'
5607 3' -61.5 NC_001806.1 + 107135 0.66 0.689732
Target:  5'- cACCUgGUGGCCGagauUCUgGAgCGCGAa -3'
miRNA:   3'- cUGGGgUACCGGCg---AGGgUUgGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 58 0.66 0.689732
Target:  5'- gGGgCCCGuuuucggcgucUGGCCGCUCCUccccCCGCu- -3'
miRNA:   3'- -CUgGGGU-----------ACCGGCGAGGGuu--GGCGcu -5'
5607 3' -61.5 NC_001806.1 + 43269 0.66 0.689732
Target:  5'- uGAUCCgCGcGGCCGUUCCgCccucggaggcggAGCCGCGGc -3'
miRNA:   3'- -CUGGG-GUaCCGGCGAGG-G------------UUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 29920 0.66 0.676022
Target:  5'- cACCaCCAacagcagcggcggGGCgGCUCCCGccagucgcgaGCCGCGGc -3'
miRNA:   3'- cUGG-GGUa------------CCGgCGAGGGU----------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 91903 0.66 0.674058
Target:  5'- -uCCCCAcGGCCaugggGCggcuggagaccaucaUCaCCAACCGCGAg -3'
miRNA:   3'- cuGGGGUaCCGG-----CG---------------AG-GGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 20075 0.66 0.670125
Target:  5'- uGCUCCGcaGCCGCUCCCGucguUCGUGGc -3'
miRNA:   3'- cUGGGGUacCGGCGAGGGUu---GGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 113902 0.66 0.667172
Target:  5'- cGACCCCGUGuaCGCggCggcauguaacguggCGACCGCGGa -3'
miRNA:   3'- -CUGGGGUACcgGCGagG--------------GUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 46390 0.66 0.667172
Target:  5'- gGACCCCccggGUGGCCgGCUUuaaCAagcgcgucuucugcGCCGCGGu -3'
miRNA:   3'- -CUGGGG----UACCGG-CGAGg--GU--------------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 28116 0.66 0.660274
Target:  5'- cGAcCCCCAUGGagccCCGC-CCCGGa-GCGAg -3'
miRNA:   3'- -CU-GGGGUACC----GGCGaGGGUUggCGCU- -5'
5607 3' -61.5 NC_001806.1 + 41410 0.66 0.660274
Target:  5'- --aUCCGUGaGCCGCcugCCCAgcgcGCCGUGGu -3'
miRNA:   3'- cugGGGUAC-CGGCGa--GGGU----UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 58068 0.66 0.650402
Target:  5'- aGGCCCgGgaGGCCgaGCUCCCGGCUGaagGAg -3'
miRNA:   3'- -CUGGGgUa-CCGG--CGAGGGUUGGCg--CU- -5'
5607 3' -61.5 NC_001806.1 + 132978 0.66 0.650402
Target:  5'- cGCgCUggugGUGGCCGCUCCCucagagcccugGGCCGgGGc -3'
miRNA:   3'- cUGgGG----UACCGGCGAGGG-----------UUGGCgCU- -5'
5607 3' -61.5 NC_001806.1 + 57041 0.66 0.640516
Target:  5'- cGGgCCCggGGCCgggGCcCCCGGCUGCGu -3'
miRNA:   3'- -CUgGGGuaCCGG---CGaGGGUUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 22686 0.66 0.640516
Target:  5'- cGCCCUggGGCgGCUgUCcGCCGCGc -3'
miRNA:   3'- cUGGGGuaCCGgCGAgGGuUGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.