Results 1 - 20 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5609 | 3' | -51.6 | NC_001806.1 | + | 64754 | 0.66 | 0.988165 |
Target: 5'- aCGGCAUcucccAGAAaGCgCGCCACGGcCUCc -3' miRNA: 3'- cGCCGUA-----UUUUgUGgGUGGUGUC-GAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 32312 | 0.66 | 0.988165 |
Target: 5'- cCGGUcccccGGCACCCGCCACucCUCc -3' miRNA: 3'- cGCCGuauu-UUGUGGGUGGUGucGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 84847 | 0.66 | 0.988165 |
Target: 5'- aCGGCAaGGAGCGCCgGCgGuCGcGCUCc -3' miRNA: 3'- cGCCGUaUUUUGUGGgUGgU-GU-CGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 23459 | 0.66 | 0.988165 |
Target: 5'- cGCGGCGccccg-GgCCGCCGCGGCg- -3' miRNA: 3'- -CGCCGUauuuugUgGGUGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 16480 | 0.66 | 0.988165 |
Target: 5'- aUGGUcgAGGGgggcUugCCGCCGCGGCUg -3' miRNA: 3'- cGCCGuaUUUU----GugGGUGGUGUCGAg -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 68281 | 0.66 | 0.988165 |
Target: 5'- aCGGCcaagcuGCGCgCCGCCAUGGCg- -3' miRNA: 3'- cGCCGuauuu-UGUG-GGUGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 55027 | 0.66 | 0.988165 |
Target: 5'- gGCGGCGgccguGCACgUCGCCuugaACGGCUg -3' miRNA: 3'- -CGCCGUauuu-UGUG-GGUGG----UGUCGAg -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 50505 | 0.66 | 0.988012 |
Target: 5'- cGCGGuCGUgggggccgagcacGAGGCGCUgggcgaCACCGCAGCg- -3' miRNA: 3'- -CGCC-GUA-------------UUUUGUGG------GUGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 97608 | 0.66 | 0.986569 |
Target: 5'- uCGGCA-AGGACGCCCGCgAC-GC-Ca -3' miRNA: 3'- cGCCGUaUUUUGUGGGUGgUGuCGaG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 113093 | 0.66 | 0.986569 |
Target: 5'- gGCGGCcccggccGGC-CCCGCCGCAGaCa- -3' miRNA: 3'- -CGCCGuauu---UUGuGGGUGGUGUC-Gag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 75684 | 0.66 | 0.986569 |
Target: 5'- gGCGGCccAGcGCGCCCgcaguaGCCACgAGCg- -3' miRNA: 3'- -CGCCGuaUUuUGUGGG------UGGUG-UCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 79480 | 0.66 | 0.986569 |
Target: 5'- cGCGGCccccuGgGCCgGCaguCACGGCUCg -3' miRNA: 3'- -CGCCGuauuuUgUGGgUG---GUGUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 56862 | 0.66 | 0.984812 |
Target: 5'- cGCGGCGggcccACcgAUCCACCAgAGCg- -3' miRNA: 3'- -CGCCGUauuu-UG--UGGGUGGUgUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 134175 | 0.66 | 0.984812 |
Target: 5'- cGCGcGCAccuccuccGACGCCCA--GCAGCUCc -3' miRNA: 3'- -CGC-CGUauu-----UUGUGGGUggUGUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 124961 | 0.66 | 0.984812 |
Target: 5'- uCGGCcgAGAccaACACCCACgGCcuGGCg- -3' miRNA: 3'- cGCCGuaUUU---UGUGGGUGgUG--UCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 46202 | 0.66 | 0.984812 |
Target: 5'- gGUGGCGacuAAgGCCC-CCGCGGCc- -3' miRNA: 3'- -CGCCGUauuUUgUGGGuGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 24541 | 0.66 | 0.984812 |
Target: 5'- gGCGGCGgccucgGGGAcCACCgaCGCCAUGGCg- -3' miRNA: 3'- -CGCCGUa-----UUUU-GUGG--GUGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 49003 | 0.66 | 0.984812 |
Target: 5'- cCGGCG----GCACCUACCcCGGcCUCc -3' miRNA: 3'- cGCCGUauuuUGUGGGUGGuGUC-GAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 87671 | 0.66 | 0.984627 |
Target: 5'- gGCGGCGUAGuAgGCggggaugUCGCgAUAGCUCa -3' miRNA: 3'- -CGCCGUAUUuUgUG-------GGUGgUGUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 101021 | 0.66 | 0.982886 |
Target: 5'- aGCGGCG------GCCCGCgGC-GCUCg -3' miRNA: 3'- -CGCCGUauuuugUGGGUGgUGuCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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