miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 55027 0.66 0.988165
Target:  5'- gGCGGCGgccguGCACgUCGCCuugaACGGCUg -3'
miRNA:   3'- -CGCCGUauuu-UGUG-GGUGG----UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 68281 0.66 0.988165
Target:  5'- aCGGCcaagcuGCGCgCCGCCAUGGCg- -3'
miRNA:   3'- cGCCGuauuu-UGUG-GGUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 16480 0.66 0.988165
Target:  5'- aUGGUcgAGGGgggcUugCCGCCGCGGCUg -3'
miRNA:   3'- cGCCGuaUUUU----GugGGUGGUGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 23459 0.66 0.988165
Target:  5'- cGCGGCGccccg-GgCCGCCGCGGCg- -3'
miRNA:   3'- -CGCCGUauuuugUgGGUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 84847 0.66 0.988165
Target:  5'- aCGGCAaGGAGCGCCgGCgGuCGcGCUCc -3'
miRNA:   3'- cGCCGUaUUUUGUGGgUGgU-GU-CGAG- -5'
5609 3' -51.6 NC_001806.1 + 32312 0.66 0.988165
Target:  5'- cCGGUcccccGGCACCCGCCACucCUCc -3'
miRNA:   3'- cGCCGuauu-UUGUGGGUGGUGucGAG- -5'
5609 3' -51.6 NC_001806.1 + 64754 0.66 0.988165
Target:  5'- aCGGCAUcucccAGAAaGCgCGCCACGGcCUCc -3'
miRNA:   3'- cGCCGUA-----UUUUgUGgGUGGUGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 50505 0.66 0.988012
Target:  5'- cGCGGuCGUgggggccgagcacGAGGCGCUgggcgaCACCGCAGCg- -3'
miRNA:   3'- -CGCC-GUA-------------UUUUGUGG------GUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 113093 0.66 0.986569
Target:  5'- gGCGGCcccggccGGC-CCCGCCGCAGaCa- -3'
miRNA:   3'- -CGCCGuauu---UUGuGGGUGGUGUC-Gag -5'
5609 3' -51.6 NC_001806.1 + 75684 0.66 0.986569
Target:  5'- gGCGGCccAGcGCGCCCgcaguaGCCACgAGCg- -3'
miRNA:   3'- -CGCCGuaUUuUGUGGG------UGGUG-UCGag -5'
5609 3' -51.6 NC_001806.1 + 97608 0.66 0.986569
Target:  5'- uCGGCA-AGGACGCCCGCgAC-GC-Ca -3'
miRNA:   3'- cGCCGUaUUUUGUGGGUGgUGuCGaG- -5'
5609 3' -51.6 NC_001806.1 + 79480 0.66 0.986569
Target:  5'- cGCGGCccccuGgGCCgGCaguCACGGCUCg -3'
miRNA:   3'- -CGCCGuauuuUgUGGgUG---GUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 24541 0.66 0.984812
Target:  5'- gGCGGCGgccucgGGGAcCACCgaCGCCAUGGCg- -3'
miRNA:   3'- -CGCCGUa-----UUUU-GUGG--GUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 49003 0.66 0.984812
Target:  5'- cCGGCG----GCACCUACCcCGGcCUCc -3'
miRNA:   3'- cGCCGUauuuUGUGGGUGGuGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 46202 0.66 0.984812
Target:  5'- gGUGGCGacuAAgGCCC-CCGCGGCc- -3'
miRNA:   3'- -CGCCGUauuUUgUGGGuGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 124961 0.66 0.984812
Target:  5'- uCGGCcgAGAccaACACCCACgGCcuGGCg- -3'
miRNA:   3'- cGCCGuaUUU---UGUGGGUGgUG--UCGag -5'
5609 3' -51.6 NC_001806.1 + 134175 0.66 0.984812
Target:  5'- cGCGcGCAccuccuccGACGCCCA--GCAGCUCc -3'
miRNA:   3'- -CGC-CGUauu-----UUGUGGGUggUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 56862 0.66 0.984812
Target:  5'- cGCGGCGggcccACcgAUCCACCAgAGCg- -3'
miRNA:   3'- -CGCCGUauuu-UG--UGGGUGGUgUCGag -5'
5609 3' -51.6 NC_001806.1 + 87671 0.66 0.984627
Target:  5'- gGCGGCGUAGuAgGCggggaugUCGCgAUAGCUCa -3'
miRNA:   3'- -CGCCGUAUUuUgUG-------GGUGgUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 148582 0.66 0.982886
Target:  5'- -gGGCGUc--ACGCCCACUAucagguacacCAGCUUg -3'
miRNA:   3'- cgCCGUAuuuUGUGGGUGGU----------GUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.