miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 5' -65 NC_001806.1 + 15396 0.66 0.543623
Target:  5'- uUGGGGuuGGGUGGuGGaGGAGaCgUUGGu -3'
miRNA:   3'- -ACCCCggCCCGCC-CCgCCUUaG-GACC- -5'
5609 5' -65 NC_001806.1 + 126243 0.66 0.543623
Target:  5'- cGGGGauGGuCGGGGCGuc--CCUGGa -3'
miRNA:   3'- aCCCCggCCcGCCCCGCcuuaGGACC- -5'
5609 5' -65 NC_001806.1 + 29020 0.66 0.543623
Target:  5'- gUGGGG--GGGCGGGG-GGAcgCCg-- -3'
miRNA:   3'- -ACCCCggCCCGCCCCgCCUuaGGacc -5'
5609 5' -65 NC_001806.1 + 148087 0.66 0.543623
Target:  5'- aUGGGcGCCGaGG-GGGGCGcuGUCCg-- -3'
miRNA:   3'- -ACCC-CGGC-CCgCCCCGCcuUAGGacc -5'
5609 5' -65 NC_001806.1 + 16866 0.66 0.543623
Target:  5'- gGGGGUCuccggGGGCGGGGaguccaGGcacgcGUCCUcGGc -3'
miRNA:   3'- aCCCCGG-----CCCGCCCCg-----CCu----UAGGA-CC- -5'
5609 5' -65 NC_001806.1 + 149022 0.66 0.538037
Target:  5'- cGGGG-CGGGCuaaggggaaaaaaggGGGGCGGGuaagaaUGGg -3'
miRNA:   3'- aCCCCgGCCCG---------------CCCCGCCUuagg--ACC- -5'
5609 5' -65 NC_001806.1 + 96395 0.66 0.538037
Target:  5'- gGGGcGCCggugguucgucguauGGGCgcucuuGGGGUugacgcugGGggUCCUGGu -3'
miRNA:   3'- aCCC-CGG---------------CCCG------CCCCG--------CCuuAGGACC- -5'
5609 5' -65 NC_001806.1 + 120322 0.66 0.534324
Target:  5'- gGGGGaCgGGGCGGucgggggcGGCGGGucGUCCc-- -3'
miRNA:   3'- aCCCC-GgCCCGCC--------CCGCCU--UAGGacc -5'
5609 5' -65 NC_001806.1 + 55075 0.66 0.534324
Target:  5'- gUGGGGCUGGagggucagagacGgGGGGCGGAacAUgC-GGa -3'
miRNA:   3'- -ACCCCGGCC------------CgCCCCGCCU--UAgGaCC- -5'
5609 5' -65 NC_001806.1 + 27019 0.66 0.526003
Target:  5'- cGGcGCCGGGUGGcggaggccgaGGCGGucaucgggccgugCCUGGg -3'
miRNA:   3'- aCCcCGGCCCGCC----------CCGCCuua----------GGACC- -5'
5609 5' -65 NC_001806.1 + 3544 0.66 0.525081
Target:  5'- gGGGGaggCGGGCGcGGCGGAcagCCgccccaGGg -3'
miRNA:   3'- aCCCCg--GCCCGCcCCGCCUua-GGa-----CC- -5'
5609 5' -65 NC_001806.1 + 24530 0.66 0.525081
Target:  5'- cUGGacGGCCGGGCGGcGGCcucGGGGaCCa-- -3'
miRNA:   3'- -ACC--CCGGCCCGCC-CCG---CCUUaGGacc -5'
5609 5' -65 NC_001806.1 + 19363 0.66 0.5159
Target:  5'- gGGGGCCcuacGGccaccgauGCGGGG-GGcuucAUCCUGGu -3'
miRNA:   3'- aCCCCGG----CC--------CGCCCCgCCu---UAGGACC- -5'
5609 5' -65 NC_001806.1 + 66217 0.66 0.5159
Target:  5'- cGGGGaaGGGguugGGGGCGGAGcguugUgUGGg -3'
miRNA:   3'- aCCCCggCCCg---CCCCGCCUUa----GgACC- -5'
5609 5' -65 NC_001806.1 + 12937 0.66 0.5159
Target:  5'- cGGGGUCuucCGGGGCG-AGUUCUGGc -3'
miRNA:   3'- aCCCCGGcccGCCCCGCcUUAGGACC- -5'
5609 5' -65 NC_001806.1 + 34790 0.66 0.5159
Target:  5'- gGGGGggGGGgGGGGCGGGAaaCCa-- -3'
miRNA:   3'- aCCCCggCCCgCCCCGCCUUa-GGacc -5'
5609 5' -65 NC_001806.1 + 26704 0.66 0.5159
Target:  5'- cGuGGGCCcgggGGGCGGGGCuGAccCCUc- -3'
miRNA:   3'- aC-CCCGG----CCCGCCCCGcCUuaGGAcc -5'
5609 5' -65 NC_001806.1 + 111223 0.66 0.510422
Target:  5'- cGGGGCCucgauguggGuGGCGGcGGCGGAcagcuuugccGccucugccaauuucuUCCUGGc -3'
miRNA:   3'- aCCCCGG---------C-CCGCC-CCGCCU----------U---------------AGGACC- -5'
5609 5' -65 NC_001806.1 + 147637 0.66 0.506784
Target:  5'- cUGGGGCacaCGGcgcgcguccGCGGGGCGGGcggCC-GGc -3'
miRNA:   3'- -ACCCCG---GCC---------CGCCCCGCCUua-GGaCC- -5'
5609 5' -65 NC_001806.1 + 95295 0.66 0.506784
Target:  5'- aUGGGGgCGGGgGGcgcGGCGGAcgcgCCcaaGGg -3'
miRNA:   3'- -ACCCCgGCCCgCC---CCGCCUua--GGa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.