Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5609 | 5' | -65 | NC_001806.1 | + | 16866 | 0.66 | 0.543623 |
Target: 5'- gGGGGUCuccggGGGCGGGGaguccaGGcacgcGUCCUcGGc -3' miRNA: 3'- aCCCCGG-----CCCGCCCCg-----CCu----UAGGA-CC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 15396 | 0.66 | 0.543623 |
Target: 5'- uUGGGGuuGGGUGGuGGaGGAGaCgUUGGu -3' miRNA: 3'- -ACCCCggCCCGCC-CCgCCUUaG-GACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 148087 | 0.66 | 0.543623 |
Target: 5'- aUGGGcGCCGaGG-GGGGCGcuGUCCg-- -3' miRNA: 3'- -ACCC-CGGC-CCgCCCCGCcuUAGGacc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 126243 | 0.66 | 0.543623 |
Target: 5'- cGGGGauGGuCGGGGCGuc--CCUGGa -3' miRNA: 3'- aCCCCggCCcGCCCCGCcuuaGGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 29020 | 0.66 | 0.543623 |
Target: 5'- gUGGGG--GGGCGGGG-GGAcgCCg-- -3' miRNA: 3'- -ACCCCggCCCGCCCCgCCUuaGGacc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 149022 | 0.66 | 0.538037 |
Target: 5'- cGGGG-CGGGCuaaggggaaaaaaggGGGGCGGGuaagaaUGGg -3' miRNA: 3'- aCCCCgGCCCG---------------CCCCGCCUuagg--ACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 96395 | 0.66 | 0.538037 |
Target: 5'- gGGGcGCCggugguucgucguauGGGCgcucuuGGGGUugacgcugGGggUCCUGGu -3' miRNA: 3'- aCCC-CGG---------------CCCG------CCCCG--------CCuuAGGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 120322 | 0.66 | 0.534324 |
Target: 5'- gGGGGaCgGGGCGGucgggggcGGCGGGucGUCCc-- -3' miRNA: 3'- aCCCC-GgCCCGCC--------CCGCCU--UAGGacc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 55075 | 0.66 | 0.534324 |
Target: 5'- gUGGGGCUGGagggucagagacGgGGGGCGGAacAUgC-GGa -3' miRNA: 3'- -ACCCCGGCC------------CgCCCCGCCU--UAgGaCC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 27019 | 0.66 | 0.526003 |
Target: 5'- cGGcGCCGGGUGGcggaggccgaGGCGGucaucgggccgugCCUGGg -3' miRNA: 3'- aCCcCGGCCCGCC----------CCGCCuua----------GGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 3544 | 0.66 | 0.525081 |
Target: 5'- gGGGGaggCGGGCGcGGCGGAcagCCgccccaGGg -3' miRNA: 3'- aCCCCg--GCCCGCcCCGCCUua-GGa-----CC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 24530 | 0.66 | 0.525081 |
Target: 5'- cUGGacGGCCGGGCGGcGGCcucGGGGaCCa-- -3' miRNA: 3'- -ACC--CCGGCCCGCC-CCG---CCUUaGGacc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 26704 | 0.66 | 0.5159 |
Target: 5'- cGuGGGCCcgggGGGCGGGGCuGAccCCUc- -3' miRNA: 3'- aC-CCCGG----CCCGCCCCGcCUuaGGAcc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 19363 | 0.66 | 0.5159 |
Target: 5'- gGGGGCCcuacGGccaccgauGCGGGG-GGcuucAUCCUGGu -3' miRNA: 3'- aCCCCGG----CC--------CGCCCCgCCu---UAGGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 66217 | 0.66 | 0.5159 |
Target: 5'- cGGGGaaGGGguugGGGGCGGAGcguugUgUGGg -3' miRNA: 3'- aCCCCggCCCg---CCCCGCCUUa----GgACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 12937 | 0.66 | 0.5159 |
Target: 5'- cGGGGUCuucCGGGGCG-AGUUCUGGc -3' miRNA: 3'- aCCCCGGcccGCCCCGCcUUAGGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 34790 | 0.66 | 0.5159 |
Target: 5'- gGGGGggGGGgGGGGCGGGAaaCCa-- -3' miRNA: 3'- aCCCCggCCCgCCCCGCCUUa-GGacc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 111223 | 0.66 | 0.510422 |
Target: 5'- cGGGGCCucgauguggGuGGCGGcGGCGGAcagcuuugccGccucugccaauuucuUCCUGGc -3' miRNA: 3'- aCCCCGG---------C-CCGCC-CCGCCU----------U---------------AGGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 147637 | 0.66 | 0.506784 |
Target: 5'- cUGGGGCacaCGGcgcgcguccGCGGGGCGGGcggCC-GGc -3' miRNA: 3'- -ACCCCG---GCC---------CGCCCCGCCUua-GGaCC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 95295 | 0.66 | 0.506784 |
Target: 5'- aUGGGGgCGGGgGGcgcGGCGGAcgcgCCcaaGGg -3' miRNA: 3'- -ACCCCgGCCCgCC---CCGCCUua--GGa--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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