miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5610 5' -56.1 NC_001806.1 + 119858 0.66 0.925292
Target:  5'- cCGUGGcguGGGGCGGgCgACG-CGCCCGc -3'
miRNA:   3'- -GCGCCu--UUCUGCCaGgUGCaGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 147491 0.66 0.925292
Target:  5'- aGCGGGgcggcgccggagGGGGCGGcgCCGCGggaggGCCCGu -3'
miRNA:   3'- gCGCCU------------UUCUGCCa-GGUGCag---UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 24885 0.66 0.924758
Target:  5'- cCGUGGAggugcugggggcgGAGGCGGgcuuggCCACGcC-CCCGc -3'
miRNA:   3'- -GCGCCU-------------UUCUGCCa-----GGUGCaGuGGGU- -5'
5610 5' -56.1 NC_001806.1 + 2639 0.66 0.922051
Target:  5'- gCGCGGGgagcaguaggccuccAGGGCGGcggCCGCGggCGCCg- -3'
miRNA:   3'- -GCGCCU---------------UUCUGCCa--GGUGCa-GUGGgu -5'
5610 5' -56.1 NC_001806.1 + 27030 0.66 0.919843
Target:  5'- gGCGGAggccGAGGCGGUcaucgggccgugCCugGg-GCCCGa -3'
miRNA:   3'- gCGCCU----UUCUGCCA------------GGugCagUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 4429 0.66 0.919843
Target:  5'- gGUGGcccGGGCGGgggCgGCGUCcGCCCGg -3'
miRNA:   3'- gCGCCuu-UCUGCCa--GgUGCAG-UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 22670 0.66 0.916462
Target:  5'- cCGCGGGgauccucgccgcccuGGGGCGGcugUCCGCcG-CGCCCGc -3'
miRNA:   3'- -GCGCCU---------------UUCUGCC---AGGUG-CaGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 114874 0.66 0.914161
Target:  5'- gGCGGggGGGuaaacUUCACGcUCACCCAg -3'
miRNA:   3'- gCGCCuuUCUgcc--AGGUGC-AGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 13089 0.66 0.908247
Target:  5'- aGCGGGGcAGcaucccgauGCuGUCCAcCGUCACCCc -3'
miRNA:   3'- gCGCCUU-UC---------UGcCAGGU-GCAGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 57755 0.66 0.908247
Target:  5'- aGCGGcgGGACGGgCCGcCGUC-CCg- -3'
miRNA:   3'- gCGCCuuUCUGCCaGGU-GCAGuGGgu -5'
5610 5' -56.1 NC_001806.1 + 1492 0.66 0.908247
Target:  5'- aGCGGggGGGC-GUCguCGUCGggcUCCAg -3'
miRNA:   3'- gCGCCuuUCUGcCAGguGCAGU---GGGU- -5'
5610 5' -56.1 NC_001806.1 + 85744 0.66 0.908247
Target:  5'- uGCGGuccgGAGccgcGCGG-CCACGUCGUCCGg -3'
miRNA:   3'- gCGCCu---UUC----UGCCaGGUGCAGUGGGU- -5'
5610 5' -56.1 NC_001806.1 + 12508 0.66 0.908247
Target:  5'- gGCGGAAca--GGUgCGCGUCcCCCGc -3'
miRNA:   3'- gCGCCUUucugCCAgGUGCAGuGGGU- -5'
5610 5' -56.1 NC_001806.1 + 62468 0.66 0.906427
Target:  5'- gGCGGAccaggguggaggcuGGGAgGGUCC-CGUcCGCCUu -3'
miRNA:   3'- gCGCCU--------------UUCUgCCAGGuGCA-GUGGGu -5'
5610 5' -56.1 NC_001806.1 + 30428 0.66 0.902102
Target:  5'- gCGUGGAGGGugGGcacgggcccUCCcgcgGCGcCGCCCc -3'
miRNA:   3'- -GCGCCUUUCugCC---------AGG----UGCaGUGGGu -5'
5610 5' -56.1 NC_001806.1 + 25406 0.67 0.898305
Target:  5'- gGCGGGAGGGggcgaggggcgguggUGGUgCGCGggCGCCCc -3'
miRNA:   3'- gCGCCUUUCU---------------GCCAgGUGCa-GUGGGu -5'
5610 5' -56.1 NC_001806.1 + 3540 0.67 0.895729
Target:  5'- cCGCgGGGGAGGCGGgcgCgGCGgacagcCGCCCc -3'
miRNA:   3'- -GCG-CCUUUCUGCCa--GgUGCa-----GUGGGu -5'
5610 5' -56.1 NC_001806.1 + 24668 0.67 0.889132
Target:  5'- gCGCuGGGgcgcGAGGCGGUgCGCGcCgGCCCGg -3'
miRNA:   3'- -GCG-CCU----UUCUGCCAgGUGCaG-UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 75875 0.67 0.881619
Target:  5'- gGCGGugacccuugcccuGGAGACGGcCCuuGCGUUuaACCCAu -3'
miRNA:   3'- gCGCC-------------UUUCUGCCaGG--UGCAG--UGGGU- -5'
5610 5' -56.1 NC_001806.1 + 65448 0.67 0.881619
Target:  5'- aGCGG-GGGAUgccgcggcccccgGGUCCugGgggCGCCCGc -3'
miRNA:   3'- gCGCCuUUCUG-------------CCAGGugCa--GUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.