miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 3' -60.5 NC_001806.1 + 108083 0.69 0.491883
Target:  5'- cGAGCGACGUGccGUCCACGGCCUUGUu -3'
miRNA:   3'- -CUCGUUGCGCc-CGGGUGCUGGGGUAu -5'
5617 3' -60.5 NC_001806.1 + 4717 0.69 0.500369
Target:  5'- -cGUAGCG-GGGCCUcccguucGCGGCCCCGg- -3'
miRNA:   3'- cuCGUUGCgCCCGGG-------UGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 41213 0.69 0.501317
Target:  5'- aGAGCccCGCGccuaaaguGGCCCAgGGCCUCGUGg -3'
miRNA:   3'- -CUCGuuGCGC--------CCGGGUgCUGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 77385 0.69 0.519453
Target:  5'- cGGGCGcggGCGCGGcggccgcGCCCGCG-CCCCu-- -3'
miRNA:   3'- -CUCGU---UGCGCC-------CGGGUGCuGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 24306 0.69 0.520414
Target:  5'- cGGCGGCGCGGGaCCUGCG-CCgCAc- -3'
miRNA:   3'- cUCGUUGCGCCC-GGGUGCuGGgGUau -5'
5617 3' -60.5 NC_001806.1 + 21226 0.69 0.520414
Target:  5'- gGAGgAGgGCGGGgacgaccccgaCCACGACCCCGa- -3'
miRNA:   3'- -CUCgUUgCGCCCg----------GGUGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 145728 0.69 0.520414
Target:  5'- uGGCcGCGCGGGUgCGCGugCCUu-- -3'
miRNA:   3'- cUCGuUGCGCCCGgGUGCugGGGuau -5'
5617 3' -60.5 NC_001806.1 + 132651 0.69 0.53007
Target:  5'- -uGguGCGCGGGgCCGCGGCCgCu-- -3'
miRNA:   3'- cuCguUGCGCCCgGGUGCUGGgGuau -5'
5617 3' -60.5 NC_001806.1 + 26260 0.69 0.53007
Target:  5'- cGGGCAGCcCGGGCCCcccGCGGCCg---- -3'
miRNA:   3'- -CUCGUUGcGCCCGGG---UGCUGGgguau -5'
5617 3' -60.5 NC_001806.1 + 109239 0.69 0.53007
Target:  5'- cGGGCGGgGCGGaaUCCugGGCCCCGg- -3'
miRNA:   3'- -CUCGUUgCGCCc-GGGugCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 35866 0.68 0.536868
Target:  5'- aGGGCccAACGCGcGGCgCGCGgcucgucugaucauGCCCCAUAc -3'
miRNA:   3'- -CUCG--UUGCGC-CCGgGUGC--------------UGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 41486 0.68 0.539791
Target:  5'- cGAGCGucccgcguuAUGCGGGCCCAguCG-UCCCAg- -3'
miRNA:   3'- -CUCGU---------UGCGCCCGGGU--GCuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 30200 0.68 0.539791
Target:  5'- cGGCcGCGuCGGGaCCCGCGcGCCCCc-- -3'
miRNA:   3'- cUCGuUGC-GCCC-GGGUGC-UGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 147750 0.68 0.539791
Target:  5'- gGGGC-GCGCGGGUCCcgacGCGGCCgCGg- -3'
miRNA:   3'- -CUCGuUGCGCCCGGG----UGCUGGgGUau -5'
5617 3' -60.5 NC_001806.1 + 1612 0.68 0.549571
Target:  5'- -cGCAGCgGCGcGCCCA-GGCCCCAg- -3'
miRNA:   3'- cuCGUUG-CGCcCGGGUgCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 2811 0.68 0.549571
Target:  5'- uGGGCgGGgGCGGGCUCG-GGCCCCGg- -3'
miRNA:   3'- -CUCG-UUgCGCCCGGGUgCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 24899 0.68 0.549571
Target:  5'- gGGGCGGagGCGGGCuuggCCACGcCCCCGc- -3'
miRNA:   3'- -CUCGUUg-CGCCCG----GGUGCuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 22050 0.68 0.549571
Target:  5'- gGAGCcguggcccGGCGcCGGGCCCcCGcCCCCGg- -3'
miRNA:   3'- -CUCG--------UUGC-GCCCGGGuGCuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 125702 0.68 0.559405
Target:  5'- cGGGUugcuGCGCGGcGUCCGCG-CCCCu-- -3'
miRNA:   3'- -CUCGu---UGCGCC-CGGGUGCuGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 146188 0.68 0.559405
Target:  5'- aGGCAGCcCGGG-CCGCGGCUCUGUGg -3'
miRNA:   3'- cUCGUUGcGCCCgGGUGCUGGGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.