Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5617 | 3' | -60.5 | NC_001806.1 | + | 147026 | 0.66 | 0.709008 |
Target: 5'- aGGUAGCGCGugaggccGCCCGCGgggacgGCCCCGg- -3' miRNA: 3'- cUCGUUGCGCc------CGGGUGC------UGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 73138 | 0.73 | 0.317235 |
Target: 5'- cGGGCGaggACGaCGGGCCCACGGuuCCGg- -3' miRNA: 3'- -CUCGU---UGC-GCCCGGGUGCUggGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 30651 | 0.72 | 0.339116 |
Target: 5'- cGGcCAGgGUGGGCCCGgGACCCCc-- -3' miRNA: 3'- cUC-GUUgCGCCCGGGUgCUGGGGuau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 21502 | 0.72 | 0.346649 |
Target: 5'- cGGCGAC-CGGGCCC-CGGCCCgGg- -3' miRNA: 3'- cUCGUUGcGCCCGGGuGCUGGGgUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 150976 | 0.72 | 0.346649 |
Target: 5'- -cGCu-CGCGGGCCCACGAgCCgCGg- -3' miRNA: 3'- cuCGuuGCGCCCGGGUGCUgGG-GUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 38022 | 0.72 | 0.362071 |
Target: 5'- cGGCAGCccCGGGaccaCCGCGACCCCGa- -3' miRNA: 3'- cUCGUUGc-GCCCg---GGUGCUGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 56854 | 0.72 | 0.36996 |
Target: 5'- aGGGCGGCcgcgGCGGGCCCAcCGAUCCa--- -3' miRNA: 3'- -CUCGUUG----CGCCCGGGU-GCUGGGguau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 89527 | 0.71 | 0.377964 |
Target: 5'- cGAGCugcuGCGCGGcGCCCcggccgGCGGCCCgGUu -3' miRNA: 3'- -CUCGu---UGCGCC-CGGG------UGCUGGGgUAu -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 45288 | 0.71 | 0.377964 |
Target: 5'- cGGGaGACGCGGGCCCGCGcggggagccGCCCgGc- -3' miRNA: 3'- -CUCgUUGCGCCCGGGUGC---------UGGGgUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 125841 | 0.73 | 0.317235 |
Target: 5'- -cGCGcCGCGGGCCCcCGGCCgCCGc- -3' miRNA: 3'- cuCGUuGCGCCCGGGuGCUGG-GGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 49361 | 0.73 | 0.317235 |
Target: 5'- cGGCAGCGCcccGGGCCCgauGCGGCCCg--- -3' miRNA: 3'- cUCGUUGCG---CCCGGG---UGCUGGGguau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 56687 | 0.74 | 0.283166 |
Target: 5'- gGGGgGACGgGGGCCCGgGAaCCCCGg- -3' miRNA: 3'- -CUCgUUGCgCCCGGGUgCU-GGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 3133 | 0.85 | 0.050674 |
Target: 5'- cGGCAGCGCgGGGCCCAgGGCCCCGg- -3' miRNA: 3'- cUCGUUGCG-CCCGGGUgCUGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 113847 | 0.8 | 0.111272 |
Target: 5'- -uGCGGCGCGcGGCCCugGACCgCCAUc -3' miRNA: 3'- cuCGUUGCGC-CCGGGugCUGG-GGUAu -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 113882 | 0.79 | 0.126475 |
Target: 5'- cGGGuUAGCGCGGGgggCCACGACCCCGUGu -3' miRNA: 3'- -CUC-GUUGCGCCCg--GGUGCUGGGGUAU- -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 71952 | 0.78 | 0.147249 |
Target: 5'- -cGCGAcCGCGGGCCCugGGCCgCCGc- -3' miRNA: 3'- cuCGUU-GCGCCCGGGugCUGG-GGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 95326 | 0.78 | 0.158764 |
Target: 5'- aGGGCGGCGCGGGCCCcgacgACGACggggaCCGUGu -3' miRNA: 3'- -CUCGUUGCGCCCGGG-----UGCUGg----GGUAU- -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 23477 | 0.76 | 0.198314 |
Target: 5'- -cGCGGCGCaGGCCCGCccgcGCCCCGUGg -3' miRNA: 3'- cuCGUUGCGcCCGGGUGc---UGGGGUAU- -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 23095 | 0.75 | 0.234778 |
Target: 5'- uGAGCcugguCGCcgGGGCCCugGGCCCCGc- -3' miRNA: 3'- -CUCGuu---GCG--CCCGGGugCUGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 113032 | 0.74 | 0.276709 |
Target: 5'- cGGCGGuCGgGGGCCUuaaccGCGACCCCGUc -3' miRNA: 3'- cUCGUU-GCgCCCGGG-----UGCUGGGGUAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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