miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 3' -60.5 NC_001806.1 + 127954 0.66 0.679342
Target:  5'- aGGGCGACGCGGacucccgucugaGCCCcCGGCCaCUg-- -3'
miRNA:   3'- -CUCGUUGCGCC------------CGGGuGCUGG-GGuau -5'
5617 3' -60.5 NC_001806.1 + 125841 0.73 0.317235
Target:  5'- -cGCGcCGCGGGCCCcCGGCCgCCGc- -3'
miRNA:   3'- cuCGUuGCGCCCGGGuGCUGG-GGUau -5'
5617 3' -60.5 NC_001806.1 + 125702 0.68 0.559405
Target:  5'- cGGGUugcuGCGCGGcGUCCGCG-CCCCu-- -3'
miRNA:   3'- -CUCGu---UGCGCC-CGGGUGCuGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 125518 0.69 0.490944
Target:  5'- cGGCAcuuucugACGCcucaGGGCCUcCGACCCCAg- -3'
miRNA:   3'- cUCGU-------UGCG----CCCGGGuGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 120842 0.66 0.659363
Target:  5'- cGGCAugGCgcagcuGGGaCCCcgGCGGCCCCu-- -3'
miRNA:   3'- cUCGUugCG------CCC-GGG--UGCUGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 119602 0.66 0.709008
Target:  5'- gGAGCcccccGGCGgGGGCCgCuuugUGGCCCCAg- -3'
miRNA:   3'- -CUCG-----UUGCgCCCGG-Gu---GCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 114166 0.66 0.709008
Target:  5'- cGGCGAgGaGuGCCCcaGCGACCCCGUGa -3'
miRNA:   3'- cUCGUUgCgCcCGGG--UGCUGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 113882 0.79 0.126475
Target:  5'- cGGGuUAGCGCGGGgggCCACGACCCCGUGu -3'
miRNA:   3'- -CUC-GUUGCGCCCg--GGUGCUGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 113847 0.8 0.111272
Target:  5'- -uGCGGCGCGcGGCCCugGACCgCCAUc -3'
miRNA:   3'- cuCGUUGCGC-CCGGGugCUGG-GGUAu -5'
5617 3' -60.5 NC_001806.1 + 113147 0.69 0.482533
Target:  5'- gGGGCAGCGCcuGGCCCACGGgcgggUCCgAUGg -3'
miRNA:   3'- -CUCGUUGCGc-CCGGGUGCU-----GGGgUAU- -5'
5617 3' -60.5 NC_001806.1 + 113082 0.67 0.6393
Target:  5'- gGGGCGuACGUGgcGGCCCcggcCGGCCCCGc- -3'
miRNA:   3'- -CUCGU-UGCGC--CCGGGu---GCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 113032 0.74 0.276709
Target:  5'- cGGCGGuCGgGGGCCUuaaccGCGACCCCGUc -3'
miRNA:   3'- cUCGUU-GCgCCCGGG-----UGCUGGGGUAu -5'
5617 3' -60.5 NC_001806.1 + 110085 0.66 0.679342
Target:  5'- cGGCGACGUaacacGGCCCAgaGGCCCCc-- -3'
miRNA:   3'- cUCGUUGCGc----CCGGGUg-CUGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 109239 0.69 0.53007
Target:  5'- cGGGCGGgGCGGaaUCCugGGCCCCGg- -3'
miRNA:   3'- -CUCGUUgCGCCc-GGGugCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 108083 0.69 0.491883
Target:  5'- cGAGCGACGUGccGUCCACGGCCUUGUu -3'
miRNA:   3'- -CUCGUUGCGCc-CGGGUGCUGGGGUAu -5'
5617 3' -60.5 NC_001806.1 + 106875 0.71 0.411126
Target:  5'- cGGGCGcCGagcaGGGCCCGCGcCCCCc-- -3'
miRNA:   3'- -CUCGUuGCg---CCCGGGUGCuGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 106745 0.71 0.411126
Target:  5'- aGGGUcccuGACGCGGGCCgacaACGGCUCCGc- -3'
miRNA:   3'- -CUCG----UUGCGCCCGGg---UGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 106695 0.67 0.6393
Target:  5'- gGGGCucuuCcCGGGCCCccggGCGGCCCCcgGu -3'
miRNA:   3'- -CUCGuu--GcGCCCGGG----UGCUGGGGuaU- -5'
5617 3' -60.5 NC_001806.1 + 105178 1.06 0.001577
Target:  5'- aGAGCAACGCGGGCCCACGACCCCAUAu -3'
miRNA:   3'- -CUCGUUGCGCCCGGGUGCUGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 102577 0.66 0.659363
Target:  5'- -cGgAGCGCGGucgcuaucGUCgGCGGCCCCGUGc -3'
miRNA:   3'- cuCgUUGCGCC--------CGGgUGCUGGGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.